Literature DB >> 23692361

Gene silencing and Polycomb group proteins: an overview of their structure, mechanisms and phylogenetics.

Shahram Golbabapour1, Nazia Abdul Majid, Pouya Hassandarvish, Maryam Hajrezaie, Mahmood Ameen Abdulla, A Hamid A Hadi.   

Abstract

DNA methylation, histone modifications, and chromatin configuration are crucially important in the regulation of gene expression. Among these epigenetic mechanisms, silencing the expression of certain genes depending on developmental stage and tissue specificity is a key repressive system in genome programming. Polycomb (Pc) proteins play roles in gene silencing through different mechanisms. These proteins act in complexes and govern the histone methylation profiles of a large number of genes that regulate various cellular pathways. This review focuses on two main Pc complexes, Pc repressive complexes 1 and 2, and their phylogenetic relationship, structures, and function. The dynamic roles of these complexes in silencing will be discussed herein, with a focus on the recruitment of Pc complexes to target genes and the key factors involved in their recruitment.

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Year:  2013        PMID: 23692361      PMCID: PMC3662373          DOI: 10.1089/omi.2012.0105

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  202 in total

Review 1.  DNA methylation patterns and epigenetic memory.

Authors:  Adrian Bird
Journal:  Genes Dev       Date:  2002-01-01       Impact factor: 11.361

2.  Differential expression of human Polycomb group proteins in various tissues and cell types.

Authors:  M J Gunster; F M Raaphorst; K M Hamer; J L den Blaauwen; E Fieret; C J Meijer; A P Otte
Journal:  J Cell Biochem Suppl       Date:  2001

3.  Reconstitution of a functional core polycomb repressive complex.

Authors:  N J Francis; A J Saurin; Z Shao; R E Kingston
Journal:  Mol Cell       Date:  2001-09       Impact factor: 17.970

4.  Establishment of Polycomb silencing requires a transient interaction between PC and ESC.

Authors:  S Poux; R Melfi; V Pirrotta
Journal:  Genes Dev       Date:  2001-10-01       Impact factor: 11.361

5.  Dnmt3a binds deacetylases and is recruited by a sequence-specific repressor to silence transcription.

Authors:  F Fuks; W A Burgers; N Godin; M Kasai; T Kouzarides
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

6.  The polycomb-group gene Ezh2 is required for early mouse development.

Authors:  D O'Carroll; S Erhardt; M Pagani; S C Barton; M A Surani; T Jenuwein
Journal:  Mol Cell Biol       Date:  2001-07       Impact factor: 4.272

7.  A Drosophila Polycomb group complex includes Zeste and dTAFII proteins.

Authors:  A J Saurin; Z Shao; H Erdjument-Bromage; P Tempst; R E Kingston
Journal:  Nature       Date:  2001-08-09       Impact factor: 49.962

8.  Polycomblike PHD fingers mediate conserved interaction with enhancer of zeste protein.

Authors:  S O'Connell; L Wang; S Robert; C A Jones; R Saint; R S Jones
Journal:  J Biol Chem       Date:  2001-09-24       Impact factor: 5.157

9.  Trithorax and dCBP acting in a complex to maintain expression of a homeotic gene.

Authors:  S Petruk; Y Sedkov; S Smith; S Tillib; V Kraevski; T Nakamura; E Canaani; C M Croce; A Mazo
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

10.  Su(z)12, a novel Drosophila Polycomb group gene that is conserved in vertebrates and plants.

Authors:  A Birve; A K Sengupta; D Beuchle; J Larsson; J A Kennison; J Müller
Journal:  Development       Date:  2001-09       Impact factor: 6.868

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  18 in total

1.  The nuclear localization pattern and interaction partners of GTF2IRD1 demonstrate a role in chromatin regulation.

Authors:  Paulina Carmona-Mora; Jocelyn Widagdo; Florence Tomasetig; Cesar P Canales; Yeojoon Cha; Wei Lee; Abdullah Alshawaf; Mirella Dottori; Renee M Whan; Edna C Hardeman; Stephen J Palmer
Journal:  Hum Genet       Date:  2015-08-15       Impact factor: 4.132

2.  GSK126 (EZH2 inhibitor) interferes with ultraviolet A radiation-induced photoaging of human skin fibroblast cells.

Authors:  Haiyan Qin; Guang Zhang; Lianbo Zhang
Journal:  Exp Ther Med       Date:  2018-02-13       Impact factor: 2.447

3.  3D promoter architecture re-organization during iPSC-derived neuronal cell differentiation implicates target genes for neurodevelopmental disorders.

Authors:  Chun Su; Mariana Argenziano; Sumei Lu; James A Pippin; Matthew C Pahl; Michelle E Leonard; Diana L Cousminer; Matthew E Johnson; Chiara Lasconi; Andrew D Wells; Alessandra Chesi; Struan F A Grant
Journal:  Prog Neurobiol       Date:  2021-02-02       Impact factor: 10.885

4.  Bmi1 regulates auditory hair cell survival by maintaining redox balance.

Authors:  Y Chen; L Li; W Ni; Y Zhang; S Sun; D Miao; R Chai; H Li
Journal:  Cell Death Dis       Date:  2015-01-22       Impact factor: 8.469

5.  Methylation-mediated silencing of microRNA-211 promotes cell growth and epithelial to mesenchymal transition through activation of the AKT/β-catenin pathway in GBM.

Authors:  Weidong Li; Xiaobo Miao; Lingling Liu; Yue Zhang; Xuejun Jin; Xiaojun Luo; Hai Gao; Xubin Deng
Journal:  Oncotarget       Date:  2017-04-11

Review 6.  Methylation-Based Therapies for Colorectal Cancer.

Authors:  Klara Cervena; Anna Siskova; Tomas Buchler; Pavel Vodicka; Veronika Vymetalkova
Journal:  Cells       Date:  2020-06-24       Impact factor: 6.600

7.  Genetic determinants of multiple myeloma risk within the Wnt/beta-catenin signaling pathway.

Authors:  Alem A Belachew; Xifeng Wu; Rashida Callender; Rosalie Waller; Robert Z Orlowski; Celine M Vachon; Nicola J Camp; Elad Ziv; Michelle A T Hildebrandt
Journal:  Cancer Epidemiol       Date:  2021-06-30       Impact factor: 2.890

Review 8.  Mammalian Target of Rapamycin: Its Role in Early Neural Development and in Adult and Aged Brain Function.

Authors:  Carla Garza-Lombó; María E Gonsebatt
Journal:  Front Cell Neurosci       Date:  2016-06-16       Impact factor: 5.505

9.  Evolving DNA methylation and gene expression markers of B-cell chronic lymphocytic leukemia are present in pre-diagnostic blood samples more than 10 years prior to diagnosis.

Authors:  Panagiotis Georgiadis; Irene Liampa; Dennie G Hebels; Julian Krauskopf; Aristotelis Chatziioannou; Ioannis Valavanis; Theo M C M de Kok; Jos C S Kleinjans; Ingvar A Bergdahl; Beatrice Melin; Florentin Spaeth; Domenico Palli; R C H Vermeulen; J Vlaanderen; Marc Chadeau-Hyam; Paolo Vineis; Soterios A Kyrtopoulos
Journal:  BMC Genomics       Date:  2017-09-13       Impact factor: 3.969

10.  Polycomb group proteins: Novel molecules associated with ultraviolet A-induced photoaging of human skin.

Authors:  Zhuoxia Wu; Lianbo Zhang
Journal:  Exp Ther Med       Date:  2017-07-19       Impact factor: 2.447

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