Literature DB >> 23686012

Chemical information matters: an e-Research perspective on information and data sharing in the chemical sciences.

Colin L Bird1, Jeremy G Frey.   

Abstract

Recently, a number of organisations have called for open access to scientific information and especially to the data obtained from publicly funded research, among which the Royal Society report and the European Commission press release are particularly notable. It has long been accepted that building research on the foundations laid by other scientists is both effective and efficient. Regrettably, some disciplines, chemistry being one, have been slow to recognise the value of sharing and have thus been reluctant to curate their data and information in preparation for exchanging it. The very significant increases in both the volume and the complexity of the datasets produced has encouraged the expansion of e-Research, and stimulated the development of methodologies for managing, organising, and analysing "big data". We review the evolution of cheminformatics, the amalgam of chemistry, computer science, and information technology, and assess the wider e-Science and e-Research perspective. Chemical information does matter, as do matters of communicating data and collaborating with data. For chemistry, unique identifiers, structure representations, and property descriptors are essential to the activities of sharing and exchange. Open science entails the sharing of more than mere facts: for example, the publication of negative outcomes can facilitate better understanding of which synthetic routes to choose, an aspiration of the Dial-a-Molecule Grand Challenge. The protagonists of open notebook science go even further and exchange their thoughts and plans. We consider the concepts of preservation, curation, provenance, discovery, and access in the context of the research lifecycle, and then focus on the role of metadata, particularly the ontologies on which the emerging chemical Semantic Web will depend. Among our conclusions, we present our choice of the "grand challenges" for the preservation and sharing of chemical information.

Year:  2013        PMID: 23686012     DOI: 10.1039/c3cs60050e

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  8 in total

1.  Academic librarians at play in the field of cheminformatics: building the case for chemistry research data management.

Authors:  Leah McEwen; Ye Li
Journal:  J Comput Aided Mol Des       Date:  2014-07-20       Impact factor: 3.686

Review 2.  Machine Learning Meets with Metal Organic Frameworks for Gas Storage and Separation.

Authors:  Cigdem Altintas; Omer Faruk Altundal; Seda Keskin; Ramazan Yildirim
Journal:  J Chem Inf Model       Date:  2021-04-29       Impact factor: 4.956

3.  Usage and applications of Semantic Web techniques and technologies to support chemistry research.

Authors:  Mark I Borkum; Jeremy G Frey
Journal:  J Cheminform       Date:  2014-04-28       Impact factor: 5.514

4.  Scientific and technical data sharing: a trading perspective.

Authors:  Jeremy G Frey; Colin L Bird
Journal:  J Comput Aided Mol Des       Date:  2014-08-12       Impact factor: 3.686

5.  Chemotion ELN: an Open Source electronic lab notebook for chemists in academia.

Authors:  Pierre Tremouilhac; An Nguyen; Yu-Chieh Huang; Serhii Kotov; Dominic Sebastian Lütjohann; Florian Hübsch; Nicole Jung; Stefan Bräse
Journal:  J Cheminform       Date:  2017-09-25       Impact factor: 5.514

6.  Chemotion-ELN part 2: adaption of an embedded Ketcher editor to advanced research applications.

Authors:  Serhii Kotov; Pierre Tremouilhac; Nicole Jung; Stefan Bräse
Journal:  J Cheminform       Date:  2018-08-13       Impact factor: 5.514

Review 7.  The AI for Scientific Discovery Network.

Authors:  Samantha Kanza; Colin Leonard Bird; Mahesan Niranjan; William McNeill; Jeremy Graham Frey
Journal:  Patterns (N Y)       Date:  2021-01-08

8.  African researchers do not think differently about Open Data.

Authors:  Lara Skelly; Elisha R T Chiware
Journal:  Front Res Metr Anal       Date:  2022-07-15
  8 in total

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