Literature DB >> 23681824

Evolutionary systems biology: what it is and why it matters.

Orkun S Soyer1, Maureen A O'Malley.   

Abstract

Evolutionary systems biology (ESB) is a rapidly growing integrative approach that has the core aim of generating mechanistic and evolutionary understanding of genotype-phenotype relationships at multiple levels. ESB's more specific objectives include extending knowledge gained from model organisms to non-model organisms, predicting the effects of mutations, and defining the core network structures and dynamics that have evolved to cause particular intracellular and intercellular responses. By combining mathematical, molecular, and cellular approaches to evolution, ESB adds new insights and methods to the modern evolutionary synthesis, and offers ways in which to enhance its explanatory and predictive capacities. This combination of prediction and explanation marks ESB out as a research manifesto that goes further than its two contributing fields. Here, we summarize ESB via an analysis of characteristic research examples and exploratory questions, while also making a case for why these integrative efforts are worth pursuing.
© 2013 WILEY Periodicals, Inc.

Keywords:  evolution; genotype-phenotype mapping; integration; molecular networks; system dynamics

Mesh:

Year:  2013        PMID: 23681824     DOI: 10.1002/bies.201300029

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  15 in total

Review 1.  It's more than stamp collecting: how genome sequencing can unify biological research.

Authors:  Stephen Richards
Journal:  Trends Genet       Date:  2015-05-20       Impact factor: 11.639

2.  BioJazz: in silico evolution of cellular networks with unbounded complexity using rule-based modeling.

Authors:  Song Feng; Julien F Ollivier; Peter S Swain; Orkun S Soyer
Journal:  Nucleic Acids Res       Date:  2015-06-22       Impact factor: 16.971

Review 3.  Deep homology in the age of next-generation sequencing.

Authors:  Patrick Tschopp; Clifford J Tabin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-02-05       Impact factor: 6.237

4.  A Philosophical Perspective on Evolutionary Systems Biology.

Authors:  Maureen A O'Malley; Orkun S Soyer; Mark L Siegal
Journal:  Biol Theory       Date:  2015-03-01

Review 5.  Mathematical Modelling in Plant Synthetic Biology.

Authors:  Anna Deneer; Christian Fleck
Journal:  Methods Mol Biol       Date:  2022

6.  The Comet Cometh: Evolving Developmental Systems.

Authors:  Johannes Jaeger; Manfred Laubichler; Werner Callebaut
Journal:  Biol Theory       Date:  2015-02-17

7.  Modularity Facilitates Flexible Tuning of Plastic and Evolutionary Gene Expression Responses during Early Divergence.

Authors:  Hannu Mäkinen; Tiina Sävilammi; Spiros Papakostas; Erica Leder; Leif A Vøllestad; Craig R Primmer
Journal:  Genome Biol Evol       Date:  2018-01-01       Impact factor: 3.416

Review 8.  Advances on plant-pathogen interactions from molecular toward systems biology perspectives.

Authors:  Rémi Peyraud; Ullrich Dubiella; Adelin Barbacci; Stéphane Genin; Sylvain Raffaele; Dominique Roby
Journal:  Plant J       Date:  2017-02-10       Impact factor: 6.417

Review 9.  Getting to the edge: protein dynamical networks as a new frontier in plant-microbe interactions.

Authors:  Cassandra C Garbutt; Purushotham V Bangalore; Pegah Kannar; M S Mukhtar
Journal:  Front Plant Sci       Date:  2014-06-30       Impact factor: 5.753

10.  Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment.

Authors:  Tobias Großkopf; Jessika Consuegra; Joël Gaffé; John C Willison; Richard E Lenski; Orkun S Soyer; Dominique Schneider
Journal:  BMC Evol Biol       Date:  2016-08-20       Impact factor: 3.260

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