Literature DB >> 23681723

The comprehensive peptaibiotics database.

Norbert Stoppacher1, Nora K N Neumann, Lukas Burgstaller, Susanne Zeilinger, Thomas Degenkolb, Hans Brückner, Rainer Schuhmacher.   

Abstract

Peptaibiotics are nonribosomally biosynthesized peptides, which - according to definition - contain the marker amino acid α-aminoisobutyric acid (Aib) and possess antibiotic properties. Being known since 1958, a constantly increasing number of peptaibiotics have been described and investigated with a particular emphasis on hypocrealean fungi. Starting from the existing online 'Peptaibol Database', first published in 1997, an exhaustive literature survey of all known peptaibiotics was carried out and resulted in a list of 1043 peptaibiotics. The gathered information was compiled and used to create the new 'The Comprehensive Peptaibiotics Database', which is presented here. The database was devised as a software tool based on Microsoft (MS) Access. It is freely available from the internet at http://peptaibiotics-database.boku.ac.at and can easily be installed and operated on any computer offering a Windows XP/7 environment. It provides useful information on characteristic properties of the peptaibiotics included such as peptide category, group name of the microheterogeneous mixture to which the peptide belongs, amino acid sequence, sequence length, producing fungus, peptide subfamily, molecular formula, and monoisotopic mass. All these characteristics can be used and combined for automated search within the database, which makes The Comprehensive Peptaibiotics Database a versatile tool for the retrieval of valuable information about peptaibiotics. Sequence data have been considered as to December 14, 2012.
Copyright © 2013 Verlag Helvetica Chimica Acta AG, Zürich.

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Year:  2013        PMID: 23681723     DOI: 10.1002/cbdv.201200427

Source DB:  PubMed          Journal:  Chem Biodivers        ISSN: 1612-1872            Impact factor:   2.408


  12 in total

1.  Unique amalgamation of primary and secondary structural elements transform peptaibols into potent bioactive cell-penetrating peptides.

Authors:  Lin Du; April L Risinger; Carter A Mitchell; Jianlan You; Blake W Stamps; Ning Pan; Jarrod B King; Jean C Bopassa; Susan I V Judge; Zhibo Yang; Bradley S Stevenson; Robert H Cichewicz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-10       Impact factor: 11.205

Review 2.  The Genomes of Three Uneven Siblings: Footprints of the Lifestyles of Three Trichoderma Species.

Authors:  Monika Schmoll; Christoph Dattenböck; Nohemí Carreras-Villaseñor; Artemio Mendoza-Mendoza; Doris Tisch; Mario Ivan Alemán; Scott E Baker; Christopher Brown; Mayte Guadalupe Cervantes-Badillo; José Cetz-Chel; Gema Rosa Cristobal-Mondragon; Luis Delaye; Edgardo Ulises Esquivel-Naranjo; Alexa Frischmann; Jose de Jesus Gallardo-Negrete; Monica García-Esquivel; Elida Yazmin Gomez-Rodriguez; David R Greenwood; Miguel Hernández-Oñate; Joanna S Kruszewska; Robert Lawry; Hector M Mora-Montes; Tania Muñoz-Centeno; Maria Fernanda Nieto-Jacobo; Guillermo Nogueira Lopez; Vianey Olmedo-Monfil; Macario Osorio-Concepcion; Sebastian Piłsyk; Kyle R Pomraning; Aroa Rodriguez-Iglesias; Maria Teresa Rosales-Saavedra; J Alejandro Sánchez-Arreguín; Verena Seidl-Seiboth; Alison Stewart; Edith Elena Uresti-Rivera; Chih-Li Wang; Ting-Fang Wang; Susanne Zeilinger; Sergio Casas-Flores; Alfredo Herrera-Estrella
Journal:  Microbiol Mol Biol Rev       Date:  2016-02-10       Impact factor: 11.056

3.  Accurate dereplication of bioactive secondary metabolites from marine-derived fungi by UHPLC-DAD-QTOFMS and a MS/HRMS library.

Authors:  Sara Kildgaard; Maria Mansson; Ina Dosen; Andreas Klitgaard; Jens C Frisvad; Thomas O Larsen; Kristian F Nielsen
Journal:  Mar Drugs       Date:  2014-06-20       Impact factor: 5.118

4.  Peptaibols from Trichoderma asperellum TR356 strain isolated from Brazilian soil.

Authors:  João Pc Brito; Marcelo Hs Ramada; Mariana Tq de Magalhães; Luciano P Silva; Cirano J Ulhoa
Journal:  Springerplus       Date:  2014-10-13

5.  A Dereplication and Bioguided Discovery Approach to Reveal New Compounds from a Marine-Derived Fungus Stilbella fimetaria.

Authors:  Sara Kildgaard; Karolina Subko; Emma Phillips; Violaine Goidts; Mercedes de la Cruz; Caridad Díaz; Charlotte H Gotfredsen; Birgitte Andersen; Jens C Frisvad; Kristian F Nielsen; Thomas O Larsen
Journal:  Mar Drugs       Date:  2017-08-13       Impact factor: 5.118

6.  Biosynthesis of Fluorinated Peptaibols Using a Site-Directed Building Block Incorporation Approach.

Authors:  José Rivera-Chávez; Huzefa A Raja; Tyler N Graf; Joanna E Burdette; Cedric J Pearce; Nicholas H Oberlies
Journal:  J Nat Prod       Date:  2017-06-08       Impact factor: 4.050

7.  Crystal structures of Z-Gly-Aib-O-·0.5Ca2+·H2O and Z-Gly-Aib-OH.

Authors:  Renate Gessmann; Hans Brückner; Kyriacos Petratos
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-07-27

8.  Front line defenders of the ecological niche! Screening the structural diversity of peptaibiotics from saprotrophic and fungicolous Trichoderma/Hypocrea species.

Authors:  Christian R Röhrich; Walter M Jaklitsch; Hermann Voglmayr; Anita Iversen; Andreas Vilcinskas; Kristian Fog Nielsen; Ulf Thrane; Hans von Döhren; Hans Brückner; Thomas Degenkolb
Journal:  Fungal Divers       Date:  2014-11-01       Impact factor: 20.372

9.  New 19-Residue Peptaibols from Trichoderma Clade Viride.

Authors:  Tamás Marik; Chetna Tyagi; Gordana Racić; Dávid Rakk; András Szekeres; Csaba Vágvölgyi; László Kredics
Journal:  Microorganisms       Date:  2018-08-12

10.  Targeted Amino Acid Substitutions in a Trichoderma Peptaibol Confer Activity against Fungal Plant Pathogens and Protect Host Tissues from Botrytis cinerea Infection.

Authors:  Marta De Zotti; Luca Sella; Angela Bolzonello; Laura Gabbatore; Cristina Peggion; Alessandro Bortolotto; Ibrahim Elmaghraby; Silvio Tundo; Francesco Favaron
Journal:  Int J Mol Sci       Date:  2020-10-12       Impact factor: 5.923

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