Literature DB >> 23681635

Semiautomated analysis of dendrite morphology in cell culture.

Eric S Sweet1, Chris L Langhammer, Melinda K Kutzing, Bonnie L Firestein.   

Abstract

Quantifying dendrite morphology is a method for determining the effect of biochemical pathways and extracellular agents on neuronal development and differentiation. Quantification can be performed using Sholl analysis, dendrite counting, and length quantification. These procedures can be performed on dendrite-forming cell lines or primary neurons grown in culture. In this protocol, we describe the use of a set of computer programs to assist in quantifying many aspects of dendrite morphology, including changes in total and localized arbor complexity.

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Year:  2013        PMID： 23681635      PMCID： PMC7297434          DOI： 10.1007/978-1-62703-444-9_24

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  11 in total

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Authors:  Andreas T Schaefer; Matthew E Larkum; Bert Sakmann; Arnd Roth
Journal:  J Neurophysiol       Date:  2003-02-26       Impact factor: 2.714

2.  Postnatal neurodevelopmental disorders: meeting at the synapse?

Authors:  Huda Y Zoghbi
Journal:  Science       Date:  2003-10-31       Impact factor: 47.728

3.  Automated Sholl analysis of digitized neuronal morphology at multiple scales: Whole cell Sholl analysis versus Sholl analysis of arbor subregions.

Authors:  Christopher G Langhammer; Michelle L Previtera; Eric S Sweet; Simranjeet S Sran; Maxine Chen; Bonnie L Firestein
Journal:  Cytometry A       Date:  2010-12       Impact factor: 4.355

4.  Changes in dendritic complexity and spine morphology in transgenic mice expressing human wild-type tau.

Authors:  Dara L Dickstein; Hannah Brautigam; Steven D Stockton; James Schmeidler; Patrick R Hof
Journal:  Brain Struct Funct       Date:  2010-03-07       Impact factor: 3.270

5.  Coordinated changes in dendritic arborization and synaptic strength during neural circuit development.

Authors:  Yi-Rong Peng; Shan He; Helene Marie; Si-Yu Zeng; Jun Ma; Zhu-Jun Tan; Soo Yeun Lee; Robert C Malenka; Xiang Yu
Journal:  Neuron       Date:  2009-01-15       Impact factor: 17.173

6.  Bdnf overexpression in hippocampal neurons prevents dendritic atrophy caused by Rett-associated MECP2 mutations.

Authors:  Jennifer L Larimore; Christopher A Chapleau; Shinichi Kudo; Anne Theibert; Alan K Percy; Lucas Pozzo-Miller
Journal:  Neurobiol Dis       Date:  2009-01-03       Impact factor: 5.996

7.  Abnormalities of cell packing density and dendritic complexity in the MeCP2 A140V mouse model of Rett syndrome/X-linked mental retardation.

Authors:  Garilyn M Jentarra; Shannon L Olfers; Stephen G Rice; Nishit Srivastava; Gregg E Homanics; Mary Blue; Sakkubai Naidu; Vinodh Narayanan
Journal:  BMC Neurosci       Date:  2010-02-17       Impact factor: 3.288

8.  Impact of dendritic size and dendritic topology on burst firing in pyramidal cells.

Authors:  Ronald A J van Elburg; Arjen van Ooyen
Journal:  PLoS Comput Biol       Date:  2010-05-13       Impact factor: 4.475

9.  Dendrite and dendritic spine alterations in Alzheimer models.

Authors:  Donna L Moolman; Ottavio V Vitolo; Jean-Paul G Vonsattel; Michael L Shelanski
Journal:  J Neurocytol       Date:  2004-05

10.  A quantitative Golgi study of basal dendrites of hippocampal CA1 pyramidal cells in senile dementia of Alzheimer type.

Authors:  M Yamada; Y Wada; H Tsukagoshi; E Otomo; M Hayakawa
Journal:  J Neurol Neurosurg Psychiatry       Date:  1988-08       Impact factor: 10.154
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  5 in total

1.  Protein expression of phospho-lim kinase-1 in patients and an experimental rat model with intractable temporal lobe epilepsy.

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Journal:  Int J Clin Exp Med       Date:  2015-01-15

2.  A Novel Short Isoform of Cytosolic PSD-95 Interactor (Cypin) Regulates Neuronal Development.

Authors:  Mihir V Patel; Przemyslaw Swiatkowski; Munjin Kwon; Ana R Rodriguez; Keith Campagno; Bonnie L Firestein
Journal:  Mol Neurobiol       Date:  2018-01-02       Impact factor: 5.590

3.  Overexpression of cypin alters dendrite morphology, single neuron activity, and network properties via distinct mechanisms.

Authors:  Ana R Rodríguez; Kate M O'Neill; Przemyslaw Swiatkowski; Mihir V Patel; Bonnie L Firestein
Journal:  J Neural Eng       Date:  2018-02       Impact factor: 5.379

4.  Interaction Between CRIPT and PSD-95 Is Required for Proper Dendritic Arborization in Hippocampal Neurons.

Authors:  Anton Omelchenko; Harita Menon; Sarah G Donofrio; Gaurav Kumar; Heidi M Chapman; Joshua Roshal; Eduardo R Martinez-Montes; Tiffany L Wang; Mark R Spaller; Bonnie L Firestein
Journal:  Mol Neurobiol       Date:  2020-03-09       Impact factor: 5.590

5.  Long noncoding RNA GM12371 acts as a transcriptional regulator of synapse function.

Authors:  Bindu L Raveendra; Supriya Swarnkar; Yosef Avchalumov; Xin-An Liu; Eddie Grinman; Kerriann Badal; Adrian Reich; Bruce D Pascal; Sathyanarayanan V Puthanveettil
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-08       Impact factor: 11.205
  5 in total

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