Literature DB >> 23679464

Electrophoretic capture of a DNA chain into a nanopore.

Payam Rowghanian1, Alexander Y Grosberg.   

Abstract

Based on our formulation of the DNA electrophoresis near a pore [Rowghanian and Grosberg, Phys. Rev. E (to be published)], we address the electrophoretic DNA capture into a nanopore as a steady-state process of particle absorption to a sink placed on top of an energy barrier. Reproducing the previously observed diffusion-limited and barrier-limited regimes as two different limits of the particle absorption process and matching the data, our model suggests a slower growth of the capture rate with the DNA length for very large DNA molecules than the previous model, motivating more experiments beyond the current range of electric field and DNA length. At moderately weak electric fields, our model predicts a different effect, stating that the DNA length dependence of the capture rate first disappears as the field is reduced and eventually reverses to a decreasing trend with N.

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Year:  2013        PMID: 23679464     DOI: 10.1103/PhysRevE.87.042722

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  12 in total

1.  Remote Activation of a Nanopore for High-Performance Genetic Detection Using a pH Taxis-Mimicking Mechanism.

Authors:  Yong Wang; Kai Tian; Xiao Du; Rui-Cheng Shi; Li-Qun Gu
Journal:  Anal Chem       Date:  2017-12-04       Impact factor: 6.986

2.  Translocation of polyampholytes and intrinsically disordered proteins.

Authors:  A Johner; J F Joanny
Journal:  Eur Phys J E Soft Matter       Date:  2018-06-21       Impact factor: 1.890

3.  Probing molecular pathways for DNA orientational trapping, unzipping and translocation in nanopores by using a tunable overhang sensor.

Authors:  Yong Wang; Kai Tian; Lehr L Hunter; Brandon Ritzo; Li-Qun Gu
Journal:  Nanoscale       Date:  2014-10-07       Impact factor: 7.790

4.  How capture affects polymer translocation in a solitary nanopore.

Authors:  Swarnadeep Seth; Aniket Bhattacharya
Journal:  J Chem Phys       Date:  2022-06-28       Impact factor: 4.304

5.  Role of non-equilibrium conformations on driven polymer translocation.

Authors:  H H Katkar; M Muthukumar
Journal:  J Chem Phys       Date:  2018-01-14       Impact factor: 3.488

6.  Sequence-Specific Recognition of MicroRNAs and Other Short Nucleic Acids with Solid-State Nanopores.

Authors:  Osama K Zahid; Fanny Wang; Jan A Ruzicka; Ethan W Taylor; Adam R Hall
Journal:  Nano Lett       Date:  2016-02-02       Impact factor: 11.189

7.  Electro-osmotic capture and ionic discrimination of peptide and protein biomarkers with FraC nanopores.

Authors:  Gang Huang; Kherim Willems; Misha Soskine; Carsten Wloka; Giovanni Maglia
Journal:  Nat Commun       Date:  2017-10-16       Impact factor: 14.919

8.  DNA Translocation through Nanopores at Physiological Ionic Strengths Requires Precise Nanoscale Engineering.

Authors:  Lorenzo Franceschini; Tine Brouns; Kherim Willems; Enrico Carlon; Giovanni Maglia
Journal:  ACS Nano       Date:  2016-08-15       Impact factor: 15.881

9.  Pressure-voltage trap for DNA near a solid-state nanopore.

Authors:  David P Hoogerheide; Bo Lu; Jene A Golovchenko
Journal:  ACS Nano       Date:  2014-06-20       Impact factor: 15.881

10.  Analytical Model for Particle Capture in Nanopores Elucidates Competition among Electrophoresis, Electroosmosis, and Dielectrophoresis.

Authors:  Mauro Chinappi; Misa Yamaji; Ryuji Kawano; Fabio Cecconi
Journal:  ACS Nano       Date:  2020-11-10       Impact factor: 15.881

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