Literature DB >> 23679462

Exact protein distributions for stochastic models of gene expression using partitioning of Poisson processes.

Hodjat Pendar1, Thierry Platini, Rahul V Kulkarni.   

Abstract

Stochasticity in gene expression gives rise to fluctuations in protein levels across a population of genetically identical cells. Such fluctuations can lead to phenotypic variation in clonal populations; hence, there is considerable interest in quantifying noise in gene expression using stochastic models. However, obtaining exact analytical results for protein distributions has been an intractable task for all but the simplest models. Here, we invoke the partitioning property of Poisson processes to develop a mapping that significantly simplifies the analysis of stochastic models of gene expression. The mapping leads to exact protein distributions using results for mRNA distributions in models with promoter-based regulation. Using this approach, we derive exact analytical results for steady-state and time-dependent distributions for the basic two-stage model of gene expression. Furthermore, we show how the mapping leads to exact protein distributions for extensions of the basic model that include the effects of posttranscriptional and posttranslational regulation. The approach developed in this work is widely applicable and can contribute to a quantitative understanding of stochasticity in gene expression and its regulation.

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Year:  2013        PMID: 23679462     DOI: 10.1103/PhysRevE.87.042720

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  9 in total

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4.  Analytical Expressions and Physics for Single-Cell mRNA Distributions of the lac Operon of E. coli.

Authors:  Krishna Choudhary; Atul Narang
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5.  Stochastic models of gene transcription with upstream drives: exact solution and sample path characterization.

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Journal:  J R Soc Interface       Date:  2017-01       Impact factor: 4.118

6.  Linear mapping approximation of gene regulatory networks with stochastic dynamics.

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Journal:  Nat Commun       Date:  2018-08-17       Impact factor: 14.919

7.  Evidence that the human cell cycle is a series of uncoupled, memoryless phases.

Authors:  Hui Xiao Chao; Randy I Fakhreddin; Hristo K Shimerov; Katarzyna M Kedziora; Rashmi J Kumar; Joanna Perez; Juanita C Limas; Gavin D Grant; Jeanette Gowen Cook; Gaorav P Gupta; Jeremy E Purvis
Journal:  Mol Syst Biol       Date:  2019-03-18       Impact factor: 11.429

8.  Delay chemical master equation: direct and closed-form solutions.

Authors:  Andre Leier; Tatiana T Marquez-Lago
Journal:  Proc Math Phys Eng Sci       Date:  2015-07-08       Impact factor: 2.704

9.  A scalable computational framework for establishing long-term behavior of stochastic reaction networks.

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Journal:  PLoS Comput Biol       Date:  2014-06-26       Impact factor: 4.475

  9 in total

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