Literature DB >> 23679458

Identifying dynamical systems with bifurcations from noisy partial observation.

Yohei Kondo1, Kunihiko Kaneko, Shuji Ishihara.   

Abstract

We propose a statistical machine-learning approach to derive low-dimensional models by integrating noisy time-series data from partial observation of high-dimensional systems, aiming to utilize quantitative data on biological phenomena in the cell. In particular, the method estimates a model from data at different values of a bifurcation parameter in order to characterize biological functions as bifurcation types that are insensitive to system details and experimental errors. The method is tested using artificial data generated from two cell-cycle control system models that exhibit different bifurcations and the learned systems are shown to robustly inherit the bifurcation types.

Mesh:

Year:  2013        PMID: 23679458     DOI: 10.1103/PhysRevE.87.042716

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  4 in total

Review 1.  Estimating cellular parameters through optimization procedures: elementary principles and applications.

Authors:  Akatsuki Kimura; Antonio Celani; Hiromichi Nagao; Timothy Stasevich; Kazuyuki Nakamura
Journal:  Front Physiol       Date:  2015-03-03       Impact factor: 4.566

2.  Asymmetry hidden in birds' tracks reveals wind, heading, and orientation ability over the ocean.

Authors:  Yusuke Goto; Ken Yoda; Katsufumi Sato
Journal:  Sci Adv       Date:  2017-09-27       Impact factor: 14.136

3.  Bayesian parameter inference and model selection by population annealing in systems biology.

Authors:  Yohei Murakami
Journal:  PLoS One       Date:  2014-08-04       Impact factor: 3.240

4.  Inferring a nonlinear biochemical network model from a heterogeneous single-cell time course data.

Authors:  Yuki Shindo; Yohei Kondo; Yasushi Sako
Journal:  Sci Rep       Date:  2018-05-01       Impact factor: 4.379

  4 in total

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