Literature DB >> 23677537

A network perspective on unraveling the role of TRP channels in biology and disease.

Jung Nyeo Chun1, Jin Muk Lim, Young Kang, Eung Hee Kim, Young-Cheul Shin, Hong-Gee Kim, Dayk Jang, Dongseop Kwon, Soo-Yong Shin, Insuk So, Ju-Hong Jeon.   

Abstract

Transient receptor potential (TRP) channels are a large family of non-selective cation channels that mediate numerous physiological and pathophysiological processes; however, still largely unknown are the underlying molecular mechanisms. With data generated on an unprecedented scale, network-based approaches have been revolutionizing the way in which we understand biology and disease, discover disease genes, and develop therapeutic strategies. These circumstances have created opportunities to encounter TRP channel research to data-intensive science. In this review, we provide an introduction of network-based approaches in biomedical science, describe the current state of TRP channel network biology, and discuss the future direction of TRP channel research. Network perspective will facilitate the discovery of latent roles and underlying mechanisms of TRP channels in biology and disease.

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Year:  2013        PMID: 23677537     DOI: 10.1007/s00424-013-1292-2

Source DB:  PubMed          Journal:  Pflugers Arch        ISSN: 0031-6768            Impact factor:   3.657


  104 in total

1.  A vision for the future of genomics research.

Authors:  Francis S Collins; Eric D Green; Alan E Guttmacher; Mark S Guyer
Journal:  Nature       Date:  2003-04-14       Impact factor: 49.962

2.  A data integration methodology for systems biology: experimental verification.

Authors:  Daehee Hwang; Jennifer J Smith; Deena M Leslie; Andrea D Weston; Alistair G Rust; Stephen Ramsey; Pedro de Atauri; Andrew F Siegel; Hamid Bolouri; John D Aitchison; Leroy Hood
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-21       Impact factor: 11.205

Review 3.  Protein interaction networks in medicine and disease.

Authors:  Ian W Taylor; Jeffrey L Wrana
Journal:  Proteomics       Date:  2012-05       Impact factor: 3.984

4.  Too many roads not taken.

Authors:  Aled M Edwards; Ruth Isserlin; Gary D Bader; Stephen V Frye; Timothy M Willson; Frank H Yu
Journal:  Nature       Date:  2011-02-10       Impact factor: 49.962

Review 5.  Transient receptor potential channels as therapeutic targets.

Authors:  Magdalene M Moran; Michael Allen McAlexander; Tamás Bíró; Arpad Szallasi
Journal:  Nat Rev Drug Discov       Date:  2011-08-01       Impact factor: 84.694

Review 6.  Oncogenic TRP channels.

Authors:  V'yacheslav Lehen'kyi; Natalia Prevarskaya
Journal:  Adv Exp Med Biol       Date:  2011       Impact factor: 2.622

7.  Network modeling links breast cancer susceptibility and centrosome dysfunction.

Authors:  Miguel Angel Pujana; Jing-Dong J Han; Lea M Starita; Kristen N Stevens; Muneesh Tewari; Jin Sook Ahn; Gad Rennert; Víctor Moreno; Tomas Kirchhoff; Bert Gold; Volker Assmann; Wael M Elshamy; Jean-François Rual; Douglas Levine; Laura S Rozek; Rebecca S Gelman; Kristin C Gunsalus; Roger A Greenberg; Bijan Sobhian; Nicolas Bertin; Kavitha Venkatesan; Nono Ayivi-Guedehoussou; Xavier Solé; Pilar Hernández; Conxi Lázaro; Katherine L Nathanson; Barbara L Weber; Michael E Cusick; David E Hill; Kenneth Offit; David M Livingston; Stephen B Gruber; Jeffrey D Parvin; Marc Vidal
Journal:  Nat Genet       Date:  2007-10-07       Impact factor: 38.330

8.  The BioPAX community standard for pathway data sharing.

Authors:  Emek Demir; Michael P Cary; Suzanne Paley; Ken Fukuda; Christian Lemer; Imre Vastrik; Guanming Wu; Peter D'Eustachio; Carl Schaefer; Joanne Luciano; Frank Schacherer; Irma Martinez-Flores; Zhenjun Hu; Veronica Jimenez-Jacinto; Geeta Joshi-Tope; Kumaran Kandasamy; Alejandra C Lopez-Fuentes; Huaiyu Mi; Elgar Pichler; Igor Rodchenkov; Andrea Splendiani; Sasha Tkachev; Jeremy Zucker; Gopal Gopinath; Harsha Rajasimha; Ranjani Ramakrishnan; Imran Shah; Mustafa Syed; Nadia Anwar; Ozgün Babur; Michael Blinov; Erik Brauner; Dan Corwin; Sylva Donaldson; Frank Gibbons; Robert Goldberg; Peter Hornbeck; Augustin Luna; Peter Murray-Rust; Eric Neumann; Oliver Ruebenacker; Oliver Reubenacker; Matthias Samwald; Martijn van Iersel; Sarala Wimalaratne; Keith Allen; Burk Braun; Michelle Whirl-Carrillo; Kei-Hoi Cheung; Kam Dahlquist; Andrew Finney; Marc Gillespie; Elizabeth Glass; Li Gong; Robin Haw; Michael Honig; Olivier Hubaut; David Kane; Shiva Krupa; Martina Kutmon; Julie Leonard; Debbie Marks; David Merberg; Victoria Petri; Alex Pico; Dean Ravenscroft; Liya Ren; Nigam Shah; Margot Sunshine; Rebecca Tang; Ryan Whaley; Stan Letovksy; Kenneth H Buetow; Andrey Rzhetsky; Vincent Schachter; Bruno S Sobral; Ugur Dogrusoz; Shannon McWeeney; Mirit Aladjem; Ewan Birney; Julio Collado-Vides; Susumu Goto; Michael Hucka; Nicolas Le Novère; Natalia Maltsev; Akhilesh Pandey; Paul Thomas; Edgar Wingender; Peter D Karp; Chris Sander; Gary D Bader
Journal:  Nat Biotechnol       Date:  2010-09-09       Impact factor: 54.908

9.  Edgetic perturbation models of human inherited disorders.

Authors:  Quan Zhong; Nicolas Simonis; Qian-Ru Li; Benoit Charloteaux; Fabien Heuze; Niels Klitgord; Stanley Tam; Haiyuan Yu; Kavitha Venkatesan; Danny Mou; Venus Swearingen; Muhammed A Yildirim; Han Yan; Amélie Dricot; David Szeto; Chenwei Lin; Tong Hao; Changyu Fan; Stuart Milstein; Denis Dupuy; Robert Brasseur; David E Hill; Michael E Cusick; Marc Vidal
Journal:  Mol Syst Biol       Date:  2009-11-03       Impact factor: 11.429

10.  Phosphoinositide 3-kinase binds to TRPV1 and mediates NGF-stimulated TRPV1 trafficking to the plasma membrane.

Authors:  Alexander T Stein; Carmen A Ufret-Vincenty; Li Hua; Luis F Santana; Sharona E Gordon
Journal:  J Gen Physiol       Date:  2006-11       Impact factor: 4.086

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  9 in total

Review 1.  Prolactin receptor in regulation of neuronal excitability and channels.

Authors:  Mayur J Patil; Michael A Henry; Armen N Akopian
Journal:  Channels (Austin)       Date:  2014       Impact factor: 2.581

2.  Single_cell_GRN: gene regulatory network identification based on supervised learning method and Single-cell RNA-seq data.

Authors:  Bin Yang; Wenzheng Bao; Baitong Chen; Dan Song
Journal:  BioData Min       Date:  2022-06-11       Impact factor: 4.079

Review 3.  Targeting TRP channels for novel migraine therapeutics.

Authors:  Gregory Dussor; J Yan; Jennifer Y Xie; Michael H Ossipov; David W Dodick; Frank Porreca
Journal:  ACS Chem Neurosci       Date:  2014-08-29       Impact factor: 4.418

Review 4.  The antitumor effects of geraniol: Modulation of cancer hallmark pathways (Review).

Authors:  Minsoo Cho; Insuk So; Jung Nyeo Chun; Ju-Hong Jeon
Journal:  Int J Oncol       Date:  2016-03-09       Impact factor: 5.650

5.  Phosphoproteomics-Based Profiling of Kinase Activities in Cancer Cells.

Authors:  Jakob Wirbel; Pedro Cutillas; Julio Saez-Rodriguez
Journal:  Methods Mol Biol       Date:  2018

6.  TRP Channels Interactome as a Novel Therapeutic Target in Breast Cancer.

Authors:  María Paz Saldías; Diego Maureira; Octavio Orellana-Serradell; Ian Silva; Boris Lavanderos; Pablo Cruz; Camila Torres; Mónica Cáceres; Oscar Cerda
Journal:  Front Oncol       Date:  2021-06-10       Impact factor: 6.244

7.  TRPV4 channel inhibits TGF-β1-induced proliferation of hepatic stellate cells.

Authors:  Yang Song; Lei Zhan; Mingzhe Yu; Cheng Huang; Xiaoming Meng; Taotao Ma; Lei Zhang; Jun Li
Journal:  PLoS One       Date:  2014-07-11       Impact factor: 3.240

8.  The contribution of TRPC1, TRPC3, TRPC5 and TRPC6 to touch and hearing.

Authors:  Jane E Sexton; Terri Desmonds; Kathryn Quick; Ruth Taylor; Joel Abramowitz; Andy Forge; Corné J Kros; Lutz Birnbaumer; John N Wood
Journal:  Neurosci Lett       Date:  2015-10-28       Impact factor: 3.046

Review 9.  Trafficking of Stretch-Regulated TRPV2 and TRPV4 Channels Inferred Through Interactomics.

Authors:  Pau Doñate-Macián; Jennifer Enrich-Bengoa; Irene R Dégano; David G Quintana; Alex Perálvarez-Marín
Journal:  Biomolecules       Date:  2019-11-27
  9 in total

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