Literature DB >> 23671103

Trp replacements for tightly interacting Gly-Gly pairs in LacY stabilize an outward-facing conformation.

Irina Smirnova1, Vladimir Kasho, Junichi Sugihara, H Ronald Kaback.   

Abstract

Trp replacements for conserved Gly-Gly pairs between the N- and C-terminal six-helix bundles on the periplasmic side of lactose permease (LacY) cause complete loss of transport activity with little or no effect on sugar binding. Moreover, the detergent-solubilized mutants exhibit much greater thermal stability than WT LacY. A Cys replacement for Asn245, which is inaccessible/unreactive in WT LacY, alkylates readily in the GlyTrp mutants, indicating that the periplasmic cavity is patent. Stopped-flow kinetic measurements of sugar binding with the GlyTrp mutants in detergent reveal linear dependence of binding rates on sugar concentration, as observed with WT or the C154G mutant of LacY, and are compatible with free access to the sugar-binding site in the middle of the molecule. Remarkably, after reconstitution of the GlyTrp mutants into proteoliposomes, the concentration dependence of sugar-binding rates increases sharply with even faster rates than measured in detergent. Such behavior is strikingly different from that observed for reconstituted WT LacY, in which sugar-binding rates are independent of sugar concentration because opening of the periplasmic cavity is limiting for sugar binding. The observations clearly indicate that GlyTrp replacements, which introduce bulky residues into tight Gly-Gly interdomain interactions on the periplasmic side of LacY, prevent closure of the periplasmic cavity and, as a result, shift the distribution of LacY toward an outward-open conformation.

Entities:  

Keywords:  alternating access; fluorescence; major facilitator superfamily; permease; symport

Mesh:

Substances:

Year:  2013        PMID: 23671103      PMCID: PMC3670396          DOI: 10.1073/pnas.1306849110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  60 in total

1.  Apo-intermediate in the transport cycle of lactose permease (LacY).

Authors:  M Gregor Madej; Sonya N Soro; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-24       Impact factor: 11.205

2.  Role of protons in sugar binding to LacY.

Authors:  Irina Smirnova; Vladimir Kasho; Junichi Sugihara; José Luis Vázquez-Ibar; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-02       Impact factor: 11.205

3.  Dynamics of the L-fucose/H+ symporter revealed by fluorescence spectroscopy.

Authors:  Junichi Sugihara; Linfeng Sun; Nieng Yan; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-28       Impact factor: 11.205

4.  Site-directed alkylation studies with LacY provide evidence for the alternating access model of transport.

Authors:  Xiaoxu Jiang; Yiling Nie; H Ronald Kaback
Journal:  Biochemistry       Date:  2011-02-08       Impact factor: 3.162

5.  Crystal structure of lactose permease in complex with an affinity inactivator yields unique insight into sugar recognition.

Authors:  Vincent Chaptal; Seunghyug Kwon; Michael R Sawaya; Lan Guan; H Ronald Kaback; Jeff Abramson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-18       Impact factor: 11.205

Review 6.  Families of transmembrane sugar transport proteins.

Authors:  M H Saier
Journal:  Mol Microbiol       Date:  2000-02       Impact factor: 3.501

7.  Lactose permease and the alternating access mechanism.

Authors:  Irina Smirnova; Vladimir Kasho; H Ronald Kaback
Journal:  Biochemistry       Date:  2011-10-19       Impact factor: 3.162

8.  Opening the periplasmic cavity in lactose permease is the limiting step for sugar binding.

Authors:  Irina Smirnova; Vladimir Kasho; Junichi Sugihara; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-06       Impact factor: 11.205

9.  Evidence for an intermediate conformational state of LacY.

Authors:  Xiaoxu Jiang; Lan Guan; Yonggang Zhou; Wen-Xu Hong; Qinghai Zhang; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-21       Impact factor: 11.205

Review 10.  The alternating access transport mechanism in LacY.

Authors:  H Ronald Kaback; Irina Smirnova; Vladimir Kasho; Yiling Nie; Yonggang Zhou
Journal:  J Membr Biol       Date:  2010-12-16       Impact factor: 1.843

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  24 in total

1.  Role of Conserved Gly-Gly Pairs on the Periplasmic Side of LacY.

Authors:  Xiaoxu Jiang; Magnus Andersson; Bryan T Chau; Larissa Y Wong; Maria Katerina R Villafuerte; H Ronald Kaback
Journal:  Biochemistry       Date:  2016-08-01       Impact factor: 3.162

2.  Outward-facing conformers of LacY stabilized by nanobodies.

Authors:  Irina Smirnova; Vladimir Kasho; Xiaoxu Jiang; Els Pardon; Jan Steyaert; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-15       Impact factor: 11.205

3.  A chemiosmotic mechanism of symport.

Authors:  H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-07       Impact factor: 11.205

4.  pKa of Glu325 in LacY.

Authors:  Natalia Grytsyk; Junichi Sugihara; H Ronald Kaback; Petra Hellwig
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-01       Impact factor: 11.205

5.  Engineered occluded apo-intermediate of LacY.

Authors:  Irina Smirnova; Vladimir Kasho; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-26       Impact factor: 11.205

6.  Structure of sugar-bound LacY.

Authors:  Hemant Kumar; Vladimir Kasho; Irina Smirnova; Janet S Finer-Moore; H Ronald Kaback; Robert M Stroud
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-22       Impact factor: 11.205

7.  Crystal structure of a LacY-nanobody complex in a periplasmic-open conformation.

Authors:  Xin Jiang; Irina Smirnova; Vladimir Kasho; Jianping Wu; Kunio Hirata; Meng Ke; Els Pardon; Jan Steyaert; Nieng Yan; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-19       Impact factor: 11.205

8.  Arg302 governs the pKa of Glu325 in LacY.

Authors:  Natalia Grytsyk; Ana Filipa Santos Seiça; Junichi Sugihara; H Ronald Kaback; Petra Hellwig
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-21       Impact factor: 11.205

9.  Real-time conformational changes in LacY.

Authors:  Irina Smirnova; Vladimir Kasho; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-28       Impact factor: 11.205

10.  Oversized galactosides as a probe for conformational dynamics in LacY.

Authors:  Irina Smirnova; Vladimir Kasho; Xiaoxu Jiang; Hong-Ming Chen; Stephen G Withers; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-30       Impact factor: 11.205

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