Literature DB >> 23667899

Genetic polymorphisms in the human tissue kallikrein (KLK) locus and their implication in various malignant and non-malignant diseases.

Jyotsna Batra1, Tracy O'Mara, Radhika Patnala, Felicity Lose, Judith A Clements.   

Abstract

The Kallikrein ( KLK ) gene locus encodes a family of serine proteases and is the largest contiguous cluster of protease-encoding genes attributed an evolutionary age of 330 million years. The KLK locus has been implicated asa high susceptibility risk loci in numerous cancer studies through the last decade. The KLK3 gene already has established clinical relevance as a biomarker in prostate cancer prognosis through its encoded protein, prostate-specific antigen. Data mined through genome-wide association studies (GWAS) and next-generation sequencing point to many important candidate single nucleotide polymorphisms(SNPs) in KLK3 and other KLK genes. SNPs in the KLK locus have been found to be associated with several diseases including cancer, hypertension, cardiovascular disease and atopic dermatitis. Moreover, introducing a model incorporating SNPs to improve the efficiency of prostate-specific antigen in detecting malignant states of prostate cancer has been recently suggested. Establishing the functional relevance of these newly-discovered SNPs, and their interactions with each other, through in silico investigations followed by experimental validation,can accelerate the discovery of diagnostic and prognostic biomarkers. In this review, we discuss the various genetic association studies on the KLK loci identified either through candidate gene association studies or at the GWAS and post-GWAS front to aid researchers in streamlining their search for the most significant, relevant and therapeutically promising candidate KLK gene and/or SNP for future investigations.

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Year:  2012        PMID: 23667899     DOI: 10.1515/hsz-2012-0211

Source DB:  PubMed          Journal:  Biol Chem        ISSN: 1431-6730            Impact factor:   3.915


  10 in total

1.  The miRNA-Kallikrein interactions: adding a new dimension.

Authors:  Maria D Pasic; Georgia Sotiropoulou; George M Yousef
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

Review 2.  Candidate gene association studies: a comprehensive guide to useful in silico tools.

Authors:  Radhika Patnala; Judith Clements; Jyotsna Batra
Journal:  BMC Genet       Date:  2013-05-09       Impact factor: 2.797

3.  A comprehensive evaluation of the role of genetic variation in follicular lymphoma survival.

Authors:  Fredrik Baecklund; Jia-Nee Foo; Paige Bracci; Hatef Darabi; Robert Karlsson; Henrik Hjalgrim; Richard Rosenquist; Hans-Olov Adami; Bengt Glimelius; Mads Melbye; Lucia Conde; Jianjun Liu; Keith Humphreys; Christine F Skibola; Karin E Smedby
Journal:  BMC Med Genet       Date:  2014-10-08       Impact factor: 2.103

Review 4.  Involvement of Kallikrein-Related Peptidases in Normal and Pathologic Processes.

Authors:  Ana Carolina B Stefanini; Bianca Rodrigues da Cunha; Tiago Henrique; Eloiza H Tajara
Journal:  Dis Markers       Date:  2015-12-09       Impact factor: 3.434

5.  Differential Gene Expression Landscape of Co-Existing Cervical Pre-Cancer Lesions Using RNA-seq.

Authors:  Kathryn E Royse; Degui Zhi; Michael G Conner; Buffie Clodfelder-Miller; Vinodh Srinivasasainagendra; Laura Kelly Vaughan; Christine F Skibola; David K Crossman; Shawn Levy; Sadeep Shrestha
Journal:  Front Oncol       Date:  2014-11-26       Impact factor: 6.244

6.  KLK3 SNP-SNP interactions for prediction of prostate cancer aggressiveness.

Authors:  Hui-Yi Lin; Po-Yu Huang; Chia-Ho Cheng; Heng-Yuan Tung; Zhide Fang; Anders E Berglund; Ann Chen; Jennifer French-Kwawu; Darian Harris; Julio Pow-Sang; Kosj Yamoah; John L Cleveland; Shivanshu Awasthi; Robert J Rounbehler; Travis Gerke; Jasreman Dhillon; Rosalind Eeles; Zsofia Kote-Jarai; Kenneth Muir; Johanna Schleutker; Nora Pashayan; David E Neal; Sune F Nielsen; Børge G Nordestgaard; Henrik Gronberg; Fredrik Wiklund; Graham G Giles; Christopher A Haiman; Ruth C Travis; Janet L Stanford; Adam S Kibel; Cezary Cybulski; Kay-Tee Khaw; Christiane Maier; Stephen N Thibodeau; Manuel R Teixeira; Lisa Cannon-Albright; Hermann Brenner; Radka Kaneva; Hardev Pandha; Srilakshmi Srinivasan; Judith Clements; Jyotsna Batra; Jong Y Park
Journal:  Sci Rep       Date:  2021-04-29       Impact factor: 4.379

7.  Copy number variants in the kallikrein gene cluster.

Authors:  Pernilla Lindahl; Torbjörn Säll; Anders Bjartell; Anna M Johansson; Hans Lilja; Christer Halldén
Journal:  PLoS One       Date:  2013-07-22       Impact factor: 3.240

Review 8.  Sweet and sour: the impact of differential glycosylation in cancer cells undergoing epithelial-mesenchymal transition.

Authors:  Leonardo Freire-de-Lima
Journal:  Front Oncol       Date:  2014-03-25       Impact factor: 6.244

9.  Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data.

Authors:  Charles Cole; Konstantinos Krampis; Konstantinos Karagiannis; Jonas S Almeida; William J Faison; Mona Motwani; Quan Wan; Anton Golikov; Yang Pan; Vahan Simonyan; Raja Mazumder
Journal:  BMC Bioinformatics       Date:  2014-01-27       Impact factor: 3.169

10.  KLK-targeted Therapies for Prostate Cancer.

Authors:  Koistinen Hannu; Mattsson Johanna; Stenman Ulf-Håkan
Journal:  EJIFCC       Date:  2014-09-04
  10 in total

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