Literature DB >> 23659727

Advanced solid-state NMR approaches for structure determination of membrane proteins and amyloid fibrils.

Ming Tang1, Gemma Comellas, Chad M Rienstra.   

Abstract

Solid-state NMR (SSNMR) spectroscopy has become an important technique for studying the biophysics and structure biology of proteins. This technique is especially useful for insoluble membrane proteins and amyloid fibrils, which are essential for biological functions and are associated with human diseases. In the past few years, as major contributors to the rapidly advancing discipline of biological SSNMR, we have developed a family of methods for high-resolution structure determination of microcrystalline, fibrous, and membrane proteins. Key developments include order-of-magnitude improvements in sensitivity, resolution, instrument stability, and sample longevity under data collection conditions. These technical advances now enable us to apply new types of 3D and 4D experiments to collect atomic-resolution structural restraints in a site-resolved manner, such as vector angles, chemical shift tensors, and internuclear distances, throughout large proteins. In this Account, we present the technological advances in SSNMR approaches towards protein structure determination. We also describe the application of those methods for large membrane proteins and amyloid fibrils. Particularly, the SSNMR measurements of an integral membrane protein DsbB support the formation of a charge-transfer complex between DsbB and ubiquinone during the disulfide bond transfer pathways. The high-resolution structure of the DsbA-DsbB complex demonstrates that the joint calculation of X-ray and SSNMR restraints for membrane proteins with low-resolution crystal structure is generally applicable. The SSNMR investigations of α-synuclein fibrils from both wild type and familial mutants reveal that the structured regions of α-synuclein fibrils include the early-onset Parkinson's disease mutation sites. These results pave the way to understanding the mechanism of fibrillation in Parkinson's disease.

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Year:  2013        PMID: 23659727     DOI: 10.1021/ar4000168

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  35 in total

1.  Proton-detected 2D radio frequency driven recoupling solid-state NMR studies on micelle-associated cytochrome-b(5).

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Kazutoshi Yamamoto; Sangchoul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2014-03-01       Impact factor: 2.229

2.  An efficient method and device for transfer of semisolid materials into solid-state NMR spectroscopy rotors.

Authors:  Grant S Hisao; Michael A Harland; Robert A Brown; Deborah A Berthold; Thomas E Wilson; Chad M Rienstra
Journal:  J Magn Reson       Date:  2016-01-29       Impact factor: 2.229

3.  Efficient assignment and NMR analysis of an intact virus using sequential side-chain correlations and DNP sensitization.

Authors:  Ivan V Sergeyev; Boris Itin; Rivkah Rogawski; Loren A Day; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

Review 4.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

5.  Nucleotide-type chemical shift assignment of the encapsulated 40 kbp dsDNA in intact bacteriophage T7 by MAS solid-state NMR.

Authors:  Gili Abramov; Amir Goldbourt
Journal:  J Biomol NMR       Date:  2014-05-30       Impact factor: 2.835

6.  Solid-state NMR studies of metal-free SOD1 fibrillar structures.

Authors:  Lucia Banci; Olga Blaževitš; Francesca Cantini; Jens Danielsson; Lisa Lang; Claudio Luchinat; Jiafei Mao; Mikael Oliveberg; Enrico Ravera
Journal:  J Biol Inorg Chem       Date:  2014-04-10       Impact factor: 3.358

7.  Solid-State NMR Studies Reveal Native-like β-Sheet Structures in Transthyretin Amyloid.

Authors:  Kwang Hun Lim; Anvesh K R Dasari; Ivan Hung; Zhehong Gan; Jeffery W Kelly; Peter E Wright; David E Wemmer
Journal:  Biochemistry       Date:  2016-09-07       Impact factor: 3.162

8.  3D ¹⁵N/¹⁵N/¹H chemical shift correlation experiment utilizing an RFDR-based ¹H/¹H mixing period at 100 kHz MAS.

Authors:  Yusuke Nishiyama; Michal Malon; Yuji Ishii; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2014-04-19       Impact factor: 2.229

9.  Structure determination of helical filaments by solid-state NMR spectroscopy.

Authors:  Lichun He; Benjamin Bardiaux; Mumdooh Ahmed; Johannes Spehr; Renate König; Heinrich Lünsdorf; Ulfert Rand; Thorsten Lührs; Christiane Ritter
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-05       Impact factor: 11.205

10.  Dynamic Nuclear Polarization as an Enabling Technology for Solid State Nuclear Magnetic Resonance Spectroscopy.

Authors:  Adam N Smith; Joanna R Long
Journal:  Anal Chem       Date:  2015-12-17       Impact factor: 6.986

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