Literature DB >> 23656731

High-throughput sequencing of B- and T-lymphocyte antigen receptors in hematology.

Edus H Warren1, Frederick A Matsen, Jeffrey Chou.   

Abstract

Application of high-throughput DNA sequencing to the analysis of B- and T-lymphocyte antigen receptors has great potential for improving the monitoring of lymphoid malignancies, assessing immune reconstitution after hematopoietic cell transplantation, and characterizing the composition of lymphocyte repertoires. Current technology can define the number and frequency of immunoglobulin heavy, T-cell receptor (TCR)α, TCRβ, or TCRγ chains expressed in a population of lymphocytes; techniques for determining the number of antigen receptor heterodimers, such as TCRαβ pairs, expressed in the population are under development.

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Year:  2013        PMID: 23656731      PMCID: PMC3701903          DOI: 10.1182/blood-2013-03-453142

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  27 in total

1.  Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing.

Authors:  J Douglas Freeman; René L Warren; John R Webb; Brad H Nelson; Robert A Holt
Journal:  Genome Res       Date:  2009-06-18       Impact factor: 9.043

2.  Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells.

Authors:  Harlan S Robins; Paulo V Campregher; Santosh K Srivastava; Abigail Wacher; Cameron J Turtle; Orsalem Kahsai; Stanley R Riddell; Edus H Warren; Christopher S Carlson
Journal:  Blood       Date:  2009-08-25       Impact factor: 22.113

3.  Origin and T cell receptor diversity of Foxp3+CD4+CD25+ T cells.

Authors:  Rafal Pacholczyk; Hanna Ignatowicz; Piotr Kraj; Leszek Ignatowicz
Journal:  Immunity       Date:  2006-08-03       Impact factor: 31.745

4.  High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets.

Authors:  Chunlin Wang; Catherine M Sanders; Qunying Yang; Harry W Schroeder; Elijah Wang; Farbod Babrzadeh; Baback Gharizadeh; Richard M Myers; James R Hudson; Ronald W Davis; Jian Han
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-04       Impact factor: 11.205

Review 5.  Design and standardization of PCR primers and protocols for detection of clonal immunoglobulin and T-cell receptor gene recombinations in suspect lymphoproliferations: report of the BIOMED-2 Concerted Action BMH4-CT98-3936.

Authors:  J J M van Dongen; A W Langerak; M Brüggemann; P A S Evans; M Hummel; F L Lavender; E Delabesse; F Davi; E Schuuring; R García-Sanz; J H J M van Krieken; J Droese; D González; C Bastard; H E White; M Spaargaren; M González; A Parreira; J L Smith; G J Morgan; M Kneba; E A Macintyre
Journal:  Leukemia       Date:  2003-12       Impact factor: 11.528

6.  Cutting edge: size and diversity of CD4+CD25high Foxp3+ regulatory T cell repertoire in humans: evidence for similarities and partial overlapping with CD4+CD25- T cells.

Authors:  Nicolas Fazilleau; Hervé Bachelez; Marie-Lise Gougeon; Manuelle Viguier
Journal:  J Immunol       Date:  2007-09-15       Impact factor: 5.422

7.  Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing.

Authors:  Peter J Campbell; Erin D Pleasance; Philip J Stephens; Ed Dicks; Richard Rance; Ian Goodhead; George A Follows; Anthony R Green; P Andy Futreal; Michael R Stratton
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-22       Impact factor: 11.205

8.  CD19-targeted T cells rapidly induce molecular remissions in adults with chemotherapy-refractory acute lymphoblastic leukemia.

Authors:  Renier J Brentjens; Marco L Davila; Isabelle Riviere; Jae Park; Xiuyan Wang; Lindsay G Cowell; Shirley Bartido; Jolanta Stefanski; Clare Taylor; Malgorzata Olszewska; Oriana Borquez-Ojeda; Jinrong Qu; Teresa Wasielewska; Qing He; Yvette Bernal; Ivelise V Rijo; Cyrus Hedvat; Rachel Kobos; Kevin Curran; Peter Steinherz; Joseph Jurcic; Todd Rosenblat; Peter Maslak; Mark Frattini; Michel Sadelain
Journal:  Sci Transl Med       Date:  2013-03-20       Impact factor: 17.956

9.  Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing.

Authors:  Scott D Boyd; Eleanor L Marshall; Jason D Merker; Jay M Maniar; Lyndon N Zhang; Bita Sahaf; Carol D Jones; Birgitte B Simen; Bozena Hanczaruk; Khoa D Nguyen; Kari C Nadeau; Michael Egholm; David B Miklos; James L Zehnder; Andrew Z Fire
Journal:  Sci Transl Med       Date:  2009-12-23       Impact factor: 17.956

10.  Structural and kinetic basis for heightened immunogenicity of T cell vaccines.

Authors:  Ji-Li Chen; Guillaume Stewart-Jones; Giovanna Bossi; Nikolai M Lissin; Linda Wooldridge; Ed Man Lik Choi; Gerhard Held; P Rod Dunbar; Robert M Esnouf; Malkit Sami; Jonathan M Boulter; Pierre Rizkallah; Christoph Renner; Andrew Sewell; P Anton van der Merwe; Bent K Jakobsen; Gillian Griffiths; E Yvonne Jones; Vincenzo Cerundolo
Journal:  J Exp Med       Date:  2005-04-18       Impact factor: 14.307

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  14 in total

1.  Ultra-high-throughput sequencing of the immune receptor repertoire from millions of lymphocytes.

Authors:  Jonathan R McDaniel; Brandon J DeKosky; Hidetaka Tanno; Andrew D Ellington; George Georgiou
Journal:  Nat Protoc       Date:  2016-02-04       Impact factor: 13.491

2.  In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire.

Authors:  Brandon J DeKosky; Takaaki Kojima; Alexa Rodin; Wissam Charab; Gregory C Ippolito; Andrew D Ellington; George Georgiou
Journal:  Nat Med       Date:  2014-12-15       Impact factor: 53.440

3.  Learning the next-generation sequencing alphabet of immune reconstitution: factors determining CD8+ T-cell receptor α-chain repertoire dynamics after hematopoietic stem cell transplantation.

Authors:  Esteban Arrieta-Bolaños; Katharina Fleischhauer
Journal:  Haematologica       Date:  2019-03       Impact factor: 9.941

4.  Minimal Residual Disease in AML: Why Has It Lagged Behind Pediatric ALL?

Authors:  Elisabeth Paietta
Journal:  Clin Lymphoma Myeloma Leuk       Date:  2015-06

5.  Abundant cytomegalovirus (CMV) reactive clonotypes in the CD8(+) T cell receptor alpha repertoire following allogeneic transplantation.

Authors:  C S Link; A Eugster; F Heidenreich; E Rücker-Braun; M Schmiedgen; U Oelschlägel; D Kühn; S Dietz; Y Fuchs; A Dahl; A M J Domingues; C Klesse; M Schmitz; G Ehninger; M Bornhäuser; J Schetelig; E Bonifacio
Journal:  Clin Exp Immunol       Date:  2016-03-08       Impact factor: 4.330

6.  Origin and evolution of the T cell repertoire after posttransplantation cyclophosphamide.

Authors:  Christopher G Kanakry; David G Coffey; Andrea M H Towlerton; Ante Vulic; Barry E Storer; Jeffrey Chou; Cecilia C S Yeung; Christopher D Gocke; Harlan S Robins; Paul V O'Donnell; Leo Luznik; Edus H Warren
Journal:  JCI Insight       Date:  2016-04-21

7.  Quantifying evolutionary constraints on B-cell affinity maturation.

Authors:  Connor O McCoy; Trevor Bedford; Vladimir N Minin; Philip Bradley; Harlan Robins; Frederick A Matsen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-09-05       Impact factor: 6.237

Review 8.  Beyond model antigens: high-dimensional methods for the analysis of antigen-specific T cells.

Authors:  Evan W Newell; Mark M Davis
Journal:  Nat Biotechnol       Date:  2014-01-19       Impact factor: 54.908

9.  Quantitative and qualitative characterization of expanded CD4+ T cell clones in rheumatoid arthritis patients.

Authors:  Kazuyoshi Ishigaki; Hirofumi Shoda; Yuta Kochi; Tetsuro Yasui; Yuho Kadono; Sakae Tanaka; Keishi Fujio; Kazuhiko Yamamoto
Journal:  Sci Rep       Date:  2015-08-06       Impact factor: 4.379

10.  Extensive recombination due to heteroduplexes generates large amounts of artificial gene fragments during PCR.

Authors:  Jia Liu; Hongshuo Song; Donglai Liu; Tao Zuo; Fengmin Lu; Hui Zhuang; Feng Gao
Journal:  PLoS One       Date:  2014-09-11       Impact factor: 3.240

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