Literature DB >> 23656704

DRIFTSEL: an R package for detecting signals of natural selection in quantitative traits.

M Karhunen1, J Merilä, T Leinonen, J M Cano, O Ovaskainen.   

Abstract

Approaches and tools to differentiate between natural selection and genetic drift as causes of population differentiation are of frequent demand in evolutionary biology. Based on the approach of Ovaskainen et al. (2011), we have developed an R package (DRIFTSEL) that can be used to differentiate between stabilizing selection, diversifying selection and random genetic drift as causes of population differentiation in quantitative traits when neutral marker and quantitative genetic data are available. Apart from illustrating the use of this method and the interpretation of results using simulated data, we apply the package on data from three-spined sticklebacks (Gasterosteus aculeatus) to highlight its virtues. DRIFTSEL can also be used to perform usual quantitative genetic analyses in common-garden study designs.
© 2013 John Wiley & Sons Ltd.

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Year:  2013        PMID: 23656704     DOI: 10.1111/1755-0998.12111

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  17 in total

Review 1.  Common garden experiments in the genomic era: new perspectives and opportunities.

Authors:  P de Villemereuil; O E Gaggiotti; M Mouterde; I Till-Bottraud
Journal:  Heredity (Edinb)       Date:  2015-10-21       Impact factor: 3.821

Review 2.  Population genomics perspectives on convergent adaptation.

Authors:  Kristin M Lee; Graham Coop
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-06-03       Impact factor: 6.237

3.  Detecting Adaptive Differentiation in Structured Populations with Genomic Data and Common Gardens.

Authors:  Emily B Josephs; Jeremy J Berg; Jeffrey Ross-Ibarra; Graham Coop
Journal:  Genetics       Date:  2019-01-24       Impact factor: 4.562

4.  Two centuries of monarch butterfly collections reveal contrasting effects of range expansion and migration loss on wing traits.

Authors:  Micah G Freedman; Hugh Dingle; Sharon Y Strauss; Santiago R Ramírez
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-02       Impact factor: 11.205

5.  Evidences of local adaptation in quantitative traits in Prosopis alba (Leguminosae).

Authors:  C Bessega; C Pometti; M Ewens; B O Saidman; J C Vilardi
Journal:  Genetica       Date:  2014-12-19       Impact factor: 1.082

6.  Modularity: genes, development and evolution.

Authors:  Diogo Melo; Arthur Porto; James M Cheverud; Gabriel Marroig
Journal:  Annu Rev Ecol Evol Syst       Date:  2016-09-07       Impact factor: 13.915

7.  Adaptation to local climate in multi-trait space: evidence from silver fir (Abies alba Mill.) populations across a heterogeneous environment.

Authors:  Katalin Csilléry; Otso Ovaskainen; Christoph Sperisen; Nina Buchmann; Alex Widmer; Felix Gugerli
Journal:  Heredity (Edinb)       Date:  2019-06-10       Impact factor: 3.821

8.  Ecological speciation in postglacial European whitefish: rapid adaptive radiations into the littoral, pelagic, and profundal lake habitats.

Authors:  Kim Præbel; Rune Knudsen; Anna Siwertsson; Markku Karhunen; Kimmo K Kahilainen; Otso Ovaskainen; Kjartan Ostbye; Stefano Peruzzi; Svein-Erik Fevolden; Per-Arne Amundsen
Journal:  Ecol Evol       Date:  2013-11-11       Impact factor: 2.912

9.  Climate change, adaptation, and phenotypic plasticity: the problem and the evidence.

Authors:  Juha Merilä; Andrew P Hendry
Journal:  Evol Appl       Date:  2014-01-08       Impact factor: 5.183

10.  DNA fragility in the parallel evolution of pelvic reduction in stickleback fish.

Authors:  Kathleen T Xie; Guliang Wang; Abbey C Thompson; Julia I Wucherpfennig; Thomas E Reimchen; Andrew D C MacColl; Dolph Schluter; Michael A Bell; Karen M Vasquez; David M Kingsley
Journal:  Science       Date:  2019-01-03       Impact factor: 47.728

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