Literature DB >> 23656326

Expanding the product profile of a microbial alkane biosynthetic pathway.

Matthew Harger1, Lei Zheng, Austin Moon, Casey Ager, Ju Hye An, Chris Choe, Yi-Ling Lai, Benjamin Mo, David Zong, Matthew D Smith, Robert G Egbert, Jeremy H Mills, David Baker, Ingrid Swanson Pultz, Justin B Siegel.   

Abstract

Microbially produced alkanes are a new class of biofuels that closely match the chemical composition of petroleum-based fuels. Alkanes can be generated from the fatty acid biosynthetic pathway by the reduction of acyl-ACPs followed by decarbonylation of the resulting aldehydes. A current limitation of this pathway is the restricted product profile, which consists of n-alkanes of 13, 15, and 17 carbons in length. To expand the product profile, we incorporated a new part, FabH2 from Bacillus subtilis , an enzyme known to have a broader specificity profile for fatty acid initiation than the native FabH of Escherichia coli . When provided with the appropriate substrate, the addition of FabH2 resulted in an altered alkane product profile in which significant levels of n-alkanes of 14 and 16 carbons in length are produced. The production of even chain length alkanes represents initial steps toward the expansion of this recently discovered microbial alkane production pathway to synthesize complex fuels. This work was conceived and performed as part of the 2011 University of Washington international Genetically Engineered Machines (iGEM) project.

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Year:  2012        PMID: 23656326      PMCID: PMC3818147          DOI: 10.1021/sb300061x

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  6 in total

1.  Microbial biosynthesis of alkanes.

Authors:  Andreas Schirmer; Mathew A Rude; Xuezhi Li; Emanuela Popova; Stephen B del Cardayre
Journal:  Science       Date:  2010-07-30       Impact factor: 47.728

2.  beta-ketoacyl-acyl carrier protein synthase III (FabH) is a determining factor in branched-chain fatty acid biosynthesis.

Authors:  K H Choi; R J Heath; C O Rock
Journal:  J Bacteriol       Date:  2000-01       Impact factor: 3.490

3.  LC-MS/MS quantification of short-chain acyl-CoA's in Escherichia coli demonstrates versatile propionyl-CoA synthetase substrate specificity.

Authors:  J W Armando; B A Boghigian; B A Pfeifer
Journal:  Lett Appl Microbiol       Date:  2011-12-20       Impact factor: 2.858

4.  The organic composition of diesel particulate matter, diesel fuel and engine oil of a non-road diesel generator.

Authors:  Fuyan Liang; Mingming Lu; Tim C Keener; Zifei Liu; Soon-Jai Khang
Journal:  J Environ Monit       Date:  2005-08-08

5.  The 1.8 A crystal structure and active-site architecture of beta-ketoacyl-acyl carrier protein synthase III (FabH) from escherichia coli.

Authors:  C Davies; R J Heath; S W White; C O Rock
Journal:  Structure       Date:  2000-02-15       Impact factor: 5.006

6.  Engineering BioBrick vectors from BioBrick parts.

Authors:  Reshma P Shetty; Drew Endy; Thomas F Knight
Journal:  J Biol Eng       Date:  2008-04-14       Impact factor: 4.355

  6 in total
  21 in total

Review 1.  Leveraging microbial biosynthetic pathways for the generation of 'drop-in' biofuels.

Authors:  Amin Zargar; Constance B Bailey; Robert W Haushalter; Christopher B Eiben; Leonard Katz; Jay D Keasling
Journal:  Curr Opin Biotechnol       Date:  2017-04-17       Impact factor: 9.740

2.  Addition of formate dehydrogenase increases the production of renewable alkane from an engineered metabolic pathway.

Authors:  Juthamas Jaroensuk; Pattarawan Intasian; Cholpisit Kiattisewee; Pobthum Munkajohnpon; Paweenapon Chunthaboon; Supacha Buttranon; Duangthip Trisrivirat; Thanyaporn Wongnate; Somchart Maenpuen; Ruchanok Tinikul; Pimchai Chaiyen
Journal:  J Biol Chem       Date:  2019-06-10       Impact factor: 5.157

3.  Microbial production of short-chain alkanes.

Authors:  Yong Jun Choi; Sang Yup Lee
Journal:  Nature       Date:  2013-09-29       Impact factor: 49.962

4.  Differences in substrate specificity of V. cholerae FabH enzymes suggest new approaches for the development of novel antibiotics and biofuels.

Authors:  Jing Hou; Heping Zheng; Wen-Shyong Tzou; David R Cooper; Maksymilian Chruszcz; Mahendra D Chordia; Keehwan Kwon; Marek Grabowski; Wladek Minor
Journal:  FEBS J       Date:  2018-06-30       Impact factor: 5.542

5.  A Continuous Culture System for Assessing Microbial Activities in the Piezosphere.

Authors:  Dionysis I Foustoukos; Ileana Pérez-Rodríguez
Journal:  Appl Environ Microbiol       Date:  2015-07-24       Impact factor: 4.792

Review 6.  Microbial engineering for aldehyde synthesis.

Authors:  Aditya M Kunjapur; Kristala L J Prather
Journal:  Appl Environ Microbiol       Date:  2015-01-09       Impact factor: 4.792

7.  Toward aldehyde and alkane production by removing aldehyde reductase activity in Escherichia coli.

Authors:  Gabriel M Rodriguez; Shota Atsumi
Journal:  Metab Eng       Date:  2014-08-07       Impact factor: 9.783

Review 8.  Recent advances in biosynthesis of fatty acids derived products in Saccharomyces cerevisiae via enhanced supply of precursor metabolites.

Authors:  Jiazhang Lian; Huimin Zhao
Journal:  J Ind Microbiol Biotechnol       Date:  2014-10-12       Impact factor: 3.346

Review 9.  Microbial engineering to produce fatty alcohols and alkanes.

Authors:  Ashima Sharma; Syed Shams Yazdani
Journal:  J Ind Microbiol Biotechnol       Date:  2021-04-30       Impact factor: 4.258

10.  Transporter engineering for improved tolerance against alkane biofuels in Saccharomyces cerevisiae.

Authors:  Binbin Chen; Hua Ling; Matthew Wook Chang
Journal:  Biotechnol Biofuels       Date:  2013-02-13       Impact factor: 6.040

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