Literature DB >> 23656279

Refactored M13 bacteriophage as a platform for tumor cell imaging and drug delivery.

Debadyuti Ghosh1,2,3, Aditya G Kohli4,1,3, Felix Moser4, Drew Endy3, Angela M Belcher4,1,2,3.   

Abstract

M13 bacteriophage is a well-characterized platform for peptide display. The utility of the M13 display platform is derived from the ability to encode phage protein fusions with display peptides at the genomic level. However, the genome of the phage is complicated by overlaps of key genetic elements. These overlaps directly couple the coding sequence of one gene to the coding or regulatory sequence of another, making it difficult to alter one gene without disrupting the other. Specifically, overlap of the end of gene VII and the beginning of gene IX has prevented the functional genomic modification of the N-terminus of p9. By redesigning the M13 genome to physically separate these overlapping genetic elements, a process known as "refactoring," we enabled independent manipulation of gene VII and gene IX and the construction of the first N-terminal genomic modification of p9 for peptide display. We demonstrate the utility of this refactored genome by developing an M13 bacteriophage-based platform for targeted imaging of and drug delivery to prostate cancer cells in vitro. This successful use of refactoring principles to re-engineer a natural biological system strengthens the suggestion that natural genomes can be rationally designed for a number of applications.

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Year:  2012        PMID: 23656279      PMCID: PMC3905571          DOI: 10.1021/sb300052u

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  32 in total

1.  Re-engineering adenovirus regulatory pathways to enhance oncolytic specificity and efficacy.

Authors:  M Ramachandra; A Rahman; A Zou; M Vaillancourt; J A Howe; D Antelman; B Sugarman; G W Demers; H Engler; D Johnson; P Shabram
Journal:  Nat Biotechnol       Date:  2001-11       Impact factor: 54.908

2.  Virus-based toolkit for the directed synthesis of magnetic and semiconducting nanowires.

Authors:  Chuanbin Mao; Daniel J Solis; Brian D Reiss; Stephen T Kottmann; Rozamond Y Sweeney; Andrew Hayhurst; George Georgiou; Brent Iverson; Angela M Belcher
Journal:  Science       Date:  2004-01-09       Impact factor: 47.728

3.  A method for the generation of combinatorial antibody libraries using pIX phage display.

Authors:  Changshou Gao; Shenlan Mao; Gunnar Kaufmann; Peter Wirsching; Richard A Lerner; Kim D Janda
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-18       Impact factor: 11.205

4.  Conformations of single-stranded DNA and coat protein in fd bacteriophage as revealed by ultraviolet absorption spectroscopy.

Authors:  L A Day
Journal:  J Mol Biol       Date:  1969-01       Impact factor: 5.469

5.  Ordering of quantum dots using genetically engineered viruses.

Authors:  Seung-Wuk Lee; Chuanbin Mao; Christine E Flynn; Angela M Belcher
Journal:  Science       Date:  2002-05-03       Impact factor: 47.728

6.  Conversion of bacteriophage fd into an efficient single-stranded DNA vector system.

Authors:  R Herrmann; K Neugebauer; E Pirkl; H Zentgraf; H Schaller
Journal:  Mol Gen Genet       Date:  1980-01

7.  Why genes overlap in viruses.

Authors:  Nicola Chirico; Alberto Vianelli; Robert Belshaw
Journal:  Proc Biol Sci       Date:  2010-07-07       Impact factor: 5.349

8.  Viral assembly of oriented quantum dot nanowires.

Authors:  Chuanbin Mao; Christine E Flynn; Andrew Hayhurst; Rozamond Sweeney; Jifa Qi; George Georgiou; Brent Iverson; Angela M Belcher
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-30       Impact factor: 11.205

9.  Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface.

Authors:  G P Smith
Journal:  Science       Date:  1985-06-14       Impact factor: 47.728

10.  Antibody-selectable filamentous fd phage vectors: affinity purification of target genes.

Authors:  S F Parmley; G P Smith
Journal:  Gene       Date:  1988-12-20       Impact factor: 3.688

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  32 in total

Review 1.  Design of virus-based nanomaterials for medicine, biotechnology, and energy.

Authors:  Amy M Wen; Nicole F Steinmetz
Journal:  Chem Soc Rev       Date:  2016-07-25       Impact factor: 54.564

Review 2.  Genetically Engineered Phages: a Review of Advances over the Last Decade.

Authors:  Diana P Pires; Sara Cleto; Sanna Sillankorva; Joana Azeredo; Timothy K Lu
Journal:  Microbiol Mol Biol Rev       Date:  2016-06-01       Impact factor: 11.056

Review 3.  Virus-Based Nanoparticles as Versatile Nanomachines.

Authors:  Kristopher J Koudelka; Andrzej S Pitek; Marianne Manchester; Nicole F Steinmetz
Journal:  Annu Rev Virol       Date:  2015-09-25       Impact factor: 10.431

Review 4.  Bacteriophages and phage-inspired nanocarriers for targeted delivery of therapeutic cargos.

Authors:  Mahdi Karimi; Hamed Mirshekari; Seyed Masoud Moosavi Basri; Sajad Bahrami; Mohsen Moghoofei; Michael R Hamblin
Journal:  Adv Drug Deliv Rev       Date:  2016-03-17       Impact factor: 15.470

Review 5.  Chemically Modifying Viruses for Diverse Applications.

Authors:  Kritika Mohan; Gregory A Weiss
Journal:  ACS Chem Biol       Date:  2016-03-21       Impact factor: 5.100

6.  Application of an M13 bacteriophage displaying tyrosine on the surface for detection of Fe(3+) and Fe(2+) ions.

Authors:  Xiaohua Guo; Chuncheng Niu; Yunhua Wu; Xiaosheng Liang
Journal:  Virol Sin       Date:  2015-12-14       Impact factor: 4.327

7.  M13 virus based detection of bacterial infections in living hosts.

Authors:  Neelkanth M Bardhan; Debadyuti Ghosh; Angela M Belcher
Journal:  J Biophotonics       Date:  2013-04-11       Impact factor: 3.207

Review 8.  Plant Viruses and Bacteriophage-Based Reagents for Diagnosis and Therapy.

Authors:  Sourabh Shukla; He Hu; Hui Cai; Soo-Khim Chan; Christine E Boone; Veronique Beiss; Paul L Chariou; Nicole F Steinmetz
Journal:  Annu Rev Virol       Date:  2020-09-29       Impact factor: 10.431

Review 9.  Bacteriophage Capsid Modification by Genetic and Chemical Methods.

Authors:  Caitlin M Carmody; Julie M Goddard; Sam R Nugen
Journal:  Bioconjug Chem       Date:  2021-03-04       Impact factor: 4.774

Review 10.  Phage engineering and the evolutionary arms race.

Authors:  Huan Peng; Irene A Chen
Journal:  Curr Opin Biotechnol       Date:  2020-10-23       Impact factor: 9.740

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