Literature DB >> 23656252

A theory of macromolecular chemotaxis.

J Michael Schurr1, Bryant S Fujimoto, Leticia Huynh, Daniel T Chiu.   

Abstract

A macromolecule in a gradient of a cosolute that is preferentially (relative to the solvent) either attracted to or excluded from the domain of the macromolecule should experience a thermodynamic force and move, respectively, up or down the gradient. A theory of chemotactic forces arising from such preferential interactions, especially short-range ligand binding and excluded volume interactions, is developed via an extension of Kirkwood-Buff theory. The ligand binding result is confirmed for both non-ionic and ionic cosolutes by standard solution thermodynamics. The effect of increasing the electrolyte concentration to diminish the electrostatic free energy of a charged macromolecule is also treated formally via an electrostatic macromolecule-electrolyte preferential interaction coefficient. For short-range interactions, the induced chemotactic velocity is attributed entirely to tangential tractions at the interface between the macromolecule and its surrounding solution. The velocity of a spherical macromolecule driven by such tractions is derived by a hydrodynamic calculation for steady-state creepy flow with a partial slip boundary condition. Qualitative comparisons of theoretical predictions with experimental observations of Zheng and Pollack pertaining to charged microspheres near the surfaces of non-ionic gels suggest that the reported exclusion zones are due to chemotaxis induced by gradients of base (NaOH) (or acid (HCl)) and salt. With a single adjustable parameter, namely, the ratio of slip length to area per surface carboxyl (or amidine) group, this theory yields nearly quantitative agreement with many observations. The estimated slip length for the microspheres is comparable to that obtained for bovine serum albumen by fitting the chemotactic theory to two reported cross-diffusion coefficients. When a solution with a gradient of NaOH is placed in contact with a smooth glass wall, chemotactic surface tractions are predicted to cause convection of the solution toward the acidic end of the gradient, as observed in preliminary experiments.

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Year:  2013        PMID: 23656252     DOI: 10.1021/jp302587d

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

1.  Long-range repulsion of colloids driven by ion exchange and diffusiophoresis.

Authors:  Daniel Florea; Sami Musa; Jacques M R Huyghe; Hans M Wyss
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-18       Impact factor: 11.205

2.  Substrate-driven chemotactic assembly in an enzyme cascade.

Authors:  Xi Zhao; Henri Palacci; Vinita Yadav; Michelle M Spiering; Michael K Gilson; Peter J Butler; Henry Hess; Stephen J Benkovic; Ayusman Sen
Journal:  Nat Chem       Date:  2017-12-18       Impact factor: 24.427

3.  Restoration of the Indicator Properties of Whole-cell Luminescent Biosensors.

Authors:  D B Kuznetsov; A Yu Mironov; V A Neschislyaev; I L Volkhin; E V Orlova; A D Shilina
Journal:  Appl Biochem Biotechnol       Date:  2022-05-25       Impact factor: 3.094

4.  Shaping the gradients driving phoretic micro-swimmers: influence of swimming speed, budget of carbonic acid and environment.

Authors:  Nadir Möller; Benno Liebchen; Thomas Palberg
Journal:  Eur Phys J E Soft Matter       Date:  2021-03-23       Impact factor: 1.890

5.  Molecular rheotaxis directs DNA migration and concentration against a pressure-driven flow.

Authors:  Sarah M Friedrich; Jeffrey M Burke; Kelvin J Liu; Cornelius F Ivory; Tza-Huei Wang
Journal:  Nat Commun       Date:  2017-10-31       Impact factor: 14.919

6.  Non-negligible Water-permeance through Nanoporous Ion Exchange Medium.

Authors:  Jung A Lee; Dokeun Lee; Sungmin Park; Hyomin Lee; Sung Jae Kim
Journal:  Sci Rep       Date:  2018-08-27       Impact factor: 4.379

Review 7.  Exclusion Zone Phenomena in Water-A Critical Review of Experimental Findings and Theories.

Authors:  Daniel C Elton; Peter D Spencer; James D Riches; Elizabeth D Williams
Journal:  Int J Mol Sci       Date:  2020-07-17       Impact factor: 5.923

8.  Computational Investigation of the Ordered Water System Around Microtubules: Implications for Protein Interactions.

Authors:  Francesco Chierici; Aristide Dogariu; Jack A Tuszynski
Journal:  Front Mol Biosci       Date:  2022-04-25

9.  Catalytic enzymes are active matter.

Authors:  Ah-Young Jee; Yoon-Kyoung Cho; Steve Granick; Tsvi Tlusty
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-01       Impact factor: 11.205

  9 in total

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