Literature DB >> 23653593

MANTA--an open-source, high density electrophysiology recording suite for MATLAB.

B Englitz1, S V David, M D Sorenson, S A Shamma.   

Abstract

The distributed nature of nervous systems makes it necessary to record from a large number of sites in order to decipher the neural code, whether single cell, local field potential (LFP), micro-electrocorticograms (μECoG), electroencephalographic (EEG), magnetoencephalographic (MEG) or in vitro micro-electrode array (MEA) data are considered. High channel-count recordings also optimize the yield of a preparation and the efficiency of time invested by the researcher. Currently, data acquisition (DAQ) systems with high channel counts (>100) can be purchased from a limited number of companies at considerable prices. These systems are typically closed-source and thus prohibit custom extensions or improvements by end users. We have developed MANTA, an open-source MATLAB-based DAQ system, as an alternative to existing options. MANTA combines high channel counts (up to 1440 channels/PC), usage of analog or digital headstages, low per channel cost (<$90/channel), feature-rich display and filtering, a user-friendly interface, and a modular design permitting easy addition of new features. MANTA is licensed under the GPL and free of charge. The system has been tested by daily use in multiple setups for >1 year, recording reliably from 128 channels. It offers a growing list of features, including integrated spike sorting, PSTH and CSD display and fully customizable electrode array geometry (including 3D arrays), some of which are not available in commercial systems. MANTA runs on a typical PC and communicates via TCP/IP and can thus be easily integrated with existing stimulus generation/control systems in a lab at a fraction of the cost of commercial systems. With modern neuroscience developing rapidly, MANTA provides a flexible platform that can be rapidly adapted to the needs of new analyses and questions. Being open-source, the development of MANTA can outpace commercial solutions in functionality, while maintaining a low price-point.

Entities:  

Keywords:  LFP; data acquisition; electrode arrays; neural recordings; μECoG

Mesh:

Year:  2013        PMID: 23653593      PMCID: PMC3644699          DOI: 10.3389/fncir.2013.00069

Source DB:  PubMed          Journal:  Front Neural Circuits        ISSN: 1662-5110            Impact factor:   3.492


  14 in total

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Review 2.  Large-scale recording of neuronal ensembles.

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4.  Sensor noise suppression.

Authors:  Alain de Cheveigné; Jonathan Z Simon
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5.  Denoising based on time-shift PCA.

Authors:  Alain de Cheveigné; Jonathan Z Simon
Journal:  J Neurosci Methods       Date:  2007-06-08       Impact factor: 2.390

6.  How advances in neural recording affect data analysis.

Authors:  Ian H Stevenson; Konrad P Kording
Journal:  Nat Neurosci       Date:  2011-02       Impact factor: 24.884

7.  Theory of current source-density analysis and determination of conductivity tensor for anuran cerebellum.

Authors:  C Nicholson; J A Freeman
Journal:  J Neurophysiol       Date:  1975-03       Impact factor: 2.714

8.  A low-cost multielectrode system for data acquisition enabling real-time closed-loop processing with rapid recovery from stimulation artifacts.

Authors:  John D Rolston; Robert E Gross; Steve M Potter
Journal:  Front Neuroeng       Date:  2009-07-23

9.  Ephus: multipurpose data acquisition software for neuroscience experiments.

Authors:  Benjamin A Suter; Timothy O'Connor; Vijay Iyer; Leopoldo T Petreanu; Bryan M Hooks; Taro Kiritani; Karel Svoboda; Gordon M G Shepherd
Journal:  Front Neural Circuits       Date:  2010-08-26       Impact factor: 3.492

10.  Multiplexed, high density electrophysiology with nanofabricated neural probes.

Authors:  Jiangang Du; Timothy J Blanche; Reid R Harrison; Henry A Lester; Sotiris C Masmanidis
Journal:  PLoS One       Date:  2011-10-12       Impact factor: 3.240

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  17 in total

1.  Integrating the Allen Brain Institute Cell Types Database into Automated Neuroscience Workflow.

Authors:  David B Stockton; Fidel Santamaria
Journal:  Neuroinformatics       Date:  2017-10

2.  Orbitofrontal Cortex Neurons Respond to Sound and Activate Primary Auditory Cortex Neurons.

Authors:  Daniel E Winkowski; Daniel A Nagode; Kevin J Donaldson; Pingbo Yin; Shihab A Shamma; Jonathan B Fritz; Patrick O Kanold
Journal:  Cereb Cortex       Date:  2018-03-01       Impact factor: 5.357

3.  Pupil-associated states modulate excitability but not stimulus selectivity in primary auditory cortex.

Authors:  Zachary P Schwartz; Brad N Buran; Stephen V David
Journal:  J Neurophysiol       Date:  2019-11-13       Impact factor: 2.714

Review 4.  Neural ensemble communities: open-source approaches to hardware for large-scale electrophysiology.

Authors:  Joshua H Siegle; Gregory J Hale; Jonathan P Newman; Jakob Voigts
Journal:  Curr Opin Neurobiol       Date:  2014-12-17       Impact factor: 6.627

5.  A low-cost, multiplexed electrophysiology system for chronic μECoG recordings in rodents.

Authors:  JuiChih Wang; Michael Trumpis; Michele Insanally; Robert Froemke; Jonathan Viventi
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2014

6.  A low-cost programmable pulse generator for physiology and behavior.

Authors:  Joshua I Sanders; Adam Kepecs
Journal:  Front Neuroeng       Date:  2014-12-11

7.  A Framework for the Comparative Assessment of Neuronal Spike Sorting Algorithms towards More Accurate Off-Line and On-Line Microelectrode Arrays Data Analysis.

Authors:  Giulia Regalia; Stefania Coelli; Emilia Biffi; Giancarlo Ferrigno; Alessandra Pedrocchi
Journal:  Comput Intell Neurosci       Date:  2016-04-27

8.  The Essential Complexity of Auditory Receptive Fields.

Authors:  Ivar L Thorson; Jean Liénard; Stephen V David
Journal:  PLoS Comput Biol       Date:  2015-12-18       Impact factor: 4.475

9.  Hard real-time closed-loop electrophysiology with the Real-Time eXperiment Interface (RTXI).

Authors:  Yogi A Patel; Ansel George; Alan D Dorval; John A White; David J Christini; Robert J Butera
Journal:  PLoS Comput Biol       Date:  2017-05-30       Impact factor: 4.475

10.  ACQ4: an open-source software platform for data acquisition and analysis in neurophysiology research.

Authors:  Luke Campagnola; Megan B Kratz; Paul B Manis
Journal:  Front Neuroinform       Date:  2014-01-30       Impact factor: 4.081

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