Literature DB >> 23651340

Effects of compartment size on the kinetics of intracompartmental multimeric protein synthesis.

Tomoaki Matsuura1, Kazufumi Hosoda, Yasuaki Kazuta, Norikazu Ichihashi, Hiroaki Suzuki, Tetsuya Yomo.   

Abstract

The cell contents are encapsulated within a compartment, the volume of which is a fundamental physical parameter that may affect intracompartmental reactions. However, there have been few studies to elucidate whether and how volume changes alone can affect the reaction kinetics. It is difficult to address these questions in vivo, because forced cell volume changes, e.g., by osmotic inflation/deflation, globally alters the internal state. Here, we prepared artificial cell-like compartments with different volumes but with identical constituents, which is not possible with living cells, and synthesized two tetrameric enzymes, β-glucuronidase (GUS) and β-galactosidase (GAL), by cell-free protein synthesis. Tetrameric GUS but not GAL was synthesized more quickly in smaller compartments. The difference between the two was dependent on the rate-limiting step and the reaction order. The observed acceleration mechanism would be applicable to living cells as multimeric protein synthesis in a microcompartment is ubiquitous in vivo.

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Year:  2012        PMID: 23651340     DOI: 10.1021/sb300041z

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  6 in total

1.  Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator.

Authors:  Maximilian Weitz; Jongmin Kim; Korbinian Kapsner; Erik Winfree; Elisa Franco; Friedrich C Simmel
Journal:  Nat Chem       Date:  2014-02-16       Impact factor: 24.427

Review 2.  Synthetic biology outside the cell: linking computational tools to cell-free systems.

Authors:  Daniel D Lewis; Fernando D Villarreal; Fan Wu; Cheemeng Tan
Journal:  Front Bioeng Biotechnol       Date:  2014-12-09

3.  A synthetic metabolic network for physicochemical homeostasis.

Authors:  Tjeerd Pols; Hendrik R Sikkema; Bauke F Gaastra; Jacopo Frallicciardi; Wojciech M Śmigiel; Shubham Singh; Bert Poolman
Journal:  Nat Commun       Date:  2019-09-18       Impact factor: 14.919

4.  Directed Evolution of Proteins through In Vitro Protein Synthesis in Liposomes.

Authors:  Takehiro Nishikawa; Takeshi Sunami; Tomoaki Matsuura; Tetsuya Yomo
Journal:  J Nucleic Acids       Date:  2012-08-16

5.  Hybrid cell reactor system from Escherichia coli protoplast cells and arrayed lipid bilayer chamber device.

Authors:  Yoshiki Moriizumi; Kazuhito V Tabata; Rikiya Watanabe; Tomohiro Doura; Mako Kamiya; Yasuteru Urano; Hiroyuki Noji
Journal:  Sci Rep       Date:  2018-08-06       Impact factor: 4.379

Review 6.  Bottom-Up Construction of Complex Biomolecular Systems With Cell-Free Synthetic Biology.

Authors:  Nadanai Laohakunakorn; Laura Grasemann; Barbora Lavickova; Grégoire Michielin; Amir Shahein; Zoe Swank; Sebastian J Maerkl
Journal:  Front Bioeng Biotechnol       Date:  2020-03-24
  6 in total

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