Literature DB >> 23645840

Long noncoding RNAs in biology and hematopoiesis.

Vikram R Paralkar1, Mitchell J Weiss.   

Abstract

Genome and transcriptome sequencing have revealed a rich assortment of noncoding RNAs in eukaryote cells, including long noncoding RNAs (lncRNAs), which regulate gene expression independent of protein coding potential. LncRNAs modulate protein coding gene expression in many cell types by regulating multiple processes, including epigenetic control of transcription, mRNA stability, and protein localization. Although little is known about lncRNAs in hematopoiesis, they are likely to exert widespread roles in this process.

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Year:  2013        PMID: 23645840      PMCID: PMC3682336          DOI: 10.1182/blood-2013-03-456111

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  34 in total

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Authors:  John L Rinn; Howard Y Chang
Journal:  Annu Rev Biochem       Date:  2012       Impact factor: 23.643

Review 2.  MicroRNAs and hematopoietic cell development.

Authors:  Ryan M O'Connell; David Baltimore
Journal:  Curr Top Dev Biol       Date:  2012       Impact factor: 4.897

Review 3.  Regulation of mammalian cell differentiation by long non-coding RNAs.

Authors:  Wenqian Hu; Juan R Alvarez-Dominguez; Harvey F Lodish
Journal:  EMBO Rep       Date:  2012-10-16       Impact factor: 8.807

Review 4.  Epigenetic regulation by long noncoding RNAs.

Authors:  Jeannie T Lee
Journal:  Science       Date:  2012-12-14       Impact factor: 47.728

5.  Genetic "lnc"-age of noncoding RNAs to human disease.

Authors:  Andrew Troy; Norman E Sharpless
Journal:  J Clin Invest       Date:  2012-10-24       Impact factor: 14.808

6.  Molecular biology: RNA discrimination.

Authors:  Monika S Kowalczyk; Douglas R Higgs; Thomas R Gingeras
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

7.  Long noncoding RNA-mediated anti-apoptotic activity in murine erythroid terminal differentiation.

Authors:  Wenqian Hu; Bingbing Yuan; Johan Flygare; Harvey F Lodish
Journal:  Genes Dev       Date:  2011-12-08       Impact factor: 11.361

8.  The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult.

Authors:  Bin Zhang; Gayatri Arun; Yuntao S Mao; Zsolt Lazar; Gene Hung; Gourab Bhattacharjee; Xiaokun Xiao; Carmen J Booth; Jie Wu; Chaolin Zhang; David L Spector
Journal:  Cell Rep       Date:  2012-06-28       Impact factor: 9.423

9.  Intragenic enhancers act as alternative promoters.

Authors:  Monika S Kowalczyk; Jim R Hughes; David Garrick; Magnus D Lynch; Jacqueline A Sharpe; Jacqueline A Sloane-Stanley; Simon J McGowan; Marco De Gobbi; Mona Hosseini; Douglas Vernimmen; Jill M Brown; Nicola E Gray; Licio Collavin; Richard J Gibbons; Jonathan Flint; Stephen Taylor; Veronica J Buckle; Thomas A Milne; William G Wood; Douglas R Higgs
Journal:  Mol Cell       Date:  2012-01-19       Impact factor: 17.970

10.  A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy.

Authors:  Daphne S Cabianca; Valentina Casa; Beatrice Bodega; Alexandros Xynos; Enrico Ginelli; Yujiro Tanaka; Davide Gabellini
Journal:  Cell       Date:  2012-04-26       Impact factor: 41.582

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  23 in total

1.  Identification of hub lncRNA ceRNAs in multiple sclerosis based on ceRNA mechanisms.

Authors:  Yanjun Ding; Taotao Li; Xinwei Yan; Mintian Cui; Chao Wang; Situo Wang; Fengmin Zhang; Ruijie Zhang
Journal:  Mol Genet Genomics       Date:  2021-01-28       Impact factor: 3.291

Review 2.  Emerging roles of long non-coding RNAs in cancer.

Authors:  Manjima Chatterjee; Sonali Sengupta
Journal:  J Biosci       Date:  2019-03       Impact factor: 1.826

3.  Global transcriptome analyses of human and murine terminal erythroid differentiation.

Authors:  Xiuli An; Vincent P Schulz; Jie Li; Kunlu Wu; Jing Liu; Fumin Xue; Jingping Hu; Narla Mohandas; Patrick G Gallagher
Journal:  Blood       Date:  2014-03-17       Impact factor: 22.113

4.  Downregulation of lncRNA TSLNC8 promotes melanoma resistance to BRAF inhibitor PLX4720 through binding with PP1α to re-activate MAPK signaling.

Authors:  Yongzhi Han; Jing Fang; Zhiwei Xiao; Jian Deng; Minghui Zhang; Lixiong Gu
Journal:  J Cancer Res Clin Oncol       Date:  2021-01-03       Impact factor: 4.553

5.  Analysis of hypoxia-induced noncoding RNAs reveals metastasis-associated lung adenocarcinoma transcript 1 as an important regulator of vascular smooth muscle cell proliferation.

Authors:  Matthias Brock; Claudio Schuoler; Caroline Leuenberger; Carlo Bühlmann; Thomas J Haider; Johannes Vogel; Silvia Ulrich; Max Gassmann; Malcolm Kohler; Lars C Huber
Journal:  Exp Biol Med (Maywood)       Date:  2017-01-05

6.  Analysis of the long noncoding RNA profiles of RD and SH-SY5Y cells infected with coxsackievirus B5, using RNA sequencing.

Authors:  Peiying Teng; Heng Yang; Jing Li; Fan Yang; Wei Chen
Journal:  Arch Virol       Date:  2021-11-28       Impact factor: 2.574

Review 7.  Long noncoding RNAs: emerging regulators of normal and malignant hematopoiesis.

Authors:  Yi Qiu; Mingjiang Xu; Suming Huang
Journal:  Blood       Date:  2021-12-09       Impact factor: 22.113

8.  Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development.

Authors:  Vikram R Paralkar; Tejaswini Mishra; Jing Luan; Yu Yao; Andrew V Kossenkov; Stacie M Anderson; Margaret Dunagin; Maxim Pimkin; Meghneel Gore; Diana Sun; Neeraja Konuthula; Arjun Raj; Xiuli An; Narla Mohandas; David M Bodine; Ross C Hardison; Mitchell J Weiss
Journal:  Blood       Date:  2014-02-04       Impact factor: 22.113

9.  The AS-RBM15 lncRNA enhances RBM15 protein translation during megakaryocyte differentiation.

Authors:  Ngoc-Tung Tran; Hairui Su; Alireza Khodadadi-Jamayran; Shan Lin; Li Zhang; Dewang Zhou; Kevin M Pawlik; Tim M Townes; Yabing Chen; James C Mulloy; Xinyang Zhao
Journal:  EMBO Rep       Date:  2016-04-26       Impact factor: 8.807

10.  An in vivo screen of noncoding loci reveals that Daedalus is a gatekeeper of an Ikaros-dependent checkpoint during haematopoiesis.

Authors:  Christian C D Harman; Will Bailis; Jun Zhao; Louisa Hill; Rihao Qu; Ruaidhrí P Jackson; Justin A Shyer; Holly R Steach; Yuval Kluger; Loyal A Goff; John L Rinn; Adam Williams; Jorge Henao-Mejia; Richard A Flavell
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-19       Impact factor: 12.779

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