Literature DB >> 23643886

Optimizing blood collection, transport and storage conditions for cell free DNA increases access to prenatal testing.

David Wong1, Sharmili Moturi1, Vach Angkachatchai1, Reinhold Mueller1, Grace DeSantis1, Dirk van den Boom2, Mathias Ehrich3.   

Abstract

OBJECTIVES: Fetal mutations and fetal chromosomal abnormalities can be detected by molecular analysis of circulating cell free fetal DNA (ccffDNA) from maternal plasma. This comprehensive study was aimed to investigate and verify blood collection and blood shipping conditions that enable Noninvasive Prenatal Testing. Specifically, the impact of shipping and storage on the stability and concentration of circulating cell-free DNA (ccfDNA) in Streck® Cell-Free DNA™ Blood Collection Tubes (Streck BCTs, Streck, Omaha NE). These BCTs were designed to minimize cellular degradation, and thus effectively prevent dilution of fetal ccf DNA by maternal genomic DNA, was evaluated. DESIGN AND METHODS: Peripheral venous maternal blood was collected into Streck BCTs to investigate four aspects of handling and processing conditions: (1) time from blood draw to plasma processing; (2) storage temperature; (3) mechanical stress; and (4) lot-to-lot tube variations.
RESULTS: Maternal blood stored in Streck BCTs for up to 7 days at ambient temperature provides stable concentrations of ccffDNA. The amount of fetal DNA did not change over a broad range of storage temperatures (4°C, 23°C, 37°C, 40°C), but the amount of total (largely maternal) DNA increased in samples stored at 23°C and above, indicating maternal cell degradation and genomic DNA release at elevated temperatures. Shipping maternal blood in Streck BCTs, did not affect sample quality.
CONCLUSIONS: Maternal plasma DNA stabilized for 0 to 7 days in Streck BCTs can be used for non-invasive prenatal molecular applications, when temperatures are maintained within the broad parameters assessed in this study.
Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  BCT; Blood preservation; Circulating cell free DNA; FF; FQA; Fetal DNA; Fetal Quantifier Assay; IRB; Institutional Review Board; MALDI-TOF MS; MPS; Maternal plasma; NIPT; NSC; NTC; Non-invasive prenatal testing; Streck® Cell-free DNA™ BCTs; blood collection tube; ccf; ccffDNA; circulating cell-free; circulating cell-free fetal DNA; fetal fraction; massively parallel sequencing; matrix-assisted laser desorption/ionization time-of-flight mass spectrometer; no storage control; no template control; non-invasive prenatal testing

Mesh:

Substances:

Year:  2013        PMID: 23643886     DOI: 10.1016/j.clinbiochem.2013.04.023

Source DB:  PubMed          Journal:  Clin Biochem        ISSN: 0009-9120            Impact factor:   3.281


  41 in total

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Authors:  Stephanie Andraos; Melissa Wake; Richard Saffery; David Burgner; Martin Kussmann; Justin O'Sullivan
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2.  Evaluation of Streck BCT and PAXgene Stabilised Blood Collection Tubes for Cell-Free Circulating DNA Studies in Plasma.

Authors:  Kristina Warton; Nicole L Yuwono; Mark J Cowley; Mark J McCabe; Alwin So; Caroline E Ford
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3.  Performance comparison of blood collection tubes as liquid biopsy storage system for minimizing cfDNA contamination from genomic DNA.

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Review 4.  Noninvasive Antenatal Determination of Fetal Blood Group Using Next-Generation Sequencing.

Authors:  Klaus Rieneck; Frederik Banch Clausen; Morten Hanefeld Dziegiel
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6.  Harmonizing Cell-Free DNA Collection and Processing Practices through Evidence-Based Guidance.

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Journal:  Clin Cancer Res       Date:  2020-03-02       Impact factor: 12.531

7.  Use of amniotic fluid for determining pregnancies at risk of preterm birth and for studying diseases of potential environmental etiology.

Authors:  Laura A Geer; Benny F G Pycke; David M Sherer; Ovadia Abulafia; Rolf U Halden
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8.  Comparison of cell stabilizing blood collection tubes for circulating plasma tumor DNA.

Authors:  Patricia Valda Toro; Bracha Erlanger; Julia A Beaver; Rory L Cochran; Dustin A VanDenBerg; Elizabeth Yakim; Karen Cravero; David Chu; Daniel J Zabransky; Hong Yuen Wong; Sarah Croessmann; Heather Parsons; Paula J Hurley; Josh Lauring; Ben Ho Park
Journal:  Clin Biochem       Date:  2015-07-31       Impact factor: 3.281

Review 9.  Testing for oncogenic molecular aberrations in cell-free DNA-based liquid biopsies in the clinic: are we there yet?

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Journal:  Expert Rev Mol Diagn       Date:  2015-11-11       Impact factor: 5.225

10.  High Interspecimen Variability in Nucleic Acid Extraction Efficiency Necessitates the Use of Spike-In Control for Accurate qPCR-based Measurement of Plasma Cell-Free DNA Levels.

Authors:  Grant C O'Connell; Paul D Chantler; Taura L Barr
Journal:  Lab Med       Date:  2017-11-08
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