Literature DB >> 23642246

Atlas-based neuroinformatics via MRI: harnessing information from past clinical cases and quantitative image analysis for patient care.

Susumu Mori1, Kenichi Oishi, Andreia V Faria, Michael I Miller.   

Abstract

With the ever-increasing amount of anatomical information radiologists have to evaluate for routine diagnoses, computational support that facilitates more efficient education and clinical decision making is highly desired. Despite the rapid progress of image analysis technologies for magnetic resonance imaging of the human brain, these methods have not been widely adopted for clinical diagnoses. To bring computational support into the clinical arena, we need to understand the decision-making process employed by well-trained clinicians and develop tools to simulate that process. In this review, we discuss the potential of atlas-based clinical neuroinformatics, which consists of annotated databases of anatomical measurements grouped according to their morphometric phenotypes and coupled with the clinical informatics upon which their diagnostic groupings are based. As these are indexed via parametric representations, we can use image retrieval tools to search for phenotypes along with their clinical metadata. The review covers the current technology, preliminary data, and future directions of this field.

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Year:  2013        PMID: 23642246      PMCID: PMC3719383          DOI: 10.1146/annurev-bioeng-071812-152335

Source DB:  PubMed          Journal:  Annu Rev Biomed Eng        ISSN: 1523-9829            Impact factor:   9.590


  94 in total

1.  Automated hippocampal segmentation by regional fluid registration of serial MRI: validation and application in Alzheimer's disease.

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Journal:  Neuroimage       Date:  2001-05       Impact factor: 6.556

2.  Atlas-based analysis of neurodevelopment from infancy to adulthood using diffusion tensor imaging and applications for automated abnormality detection.

Authors:  Andreia V Faria; Jiangyang Zhang; Kenichi Oishi; Xin Li; Hangyi Jiang; Kazi Akhter; Laurent Hermoye; Seung-Koo Lee; Alexander Hoon; Elaine Stashinko; Michael I Miller; Peter C M van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2010-04-24       Impact factor: 6.556

3.  Diffeomorphic demons: efficient non-parametric image registration.

Authors:  Tom Vercauteren; Xavier Pennec; Aymeric Perchant; Nicholas Ayache
Journal:  Neuroimage       Date:  2008-11-07       Impact factor: 6.556

4.  Local structure-based region-of-interest retrieval in brain MR images.

Authors:  Devrim Unay; Ahmet Ekin; Radu S Jasinschi
Journal:  IEEE Trans Inf Technol Biomed       Date:  2010-01-08

5.  Rating the quality of evidence for clinical practice guidelines.

Authors:  D C Hadorn; D Baker; J S Hodges; N Hicks
Journal:  J Clin Epidemiol       Date:  1996-07       Impact factor: 6.437

Review 6.  Statistical methods in computational anatomy.

Authors:  M Miller; A Banerjee; G Christensen; S Joshi; N Khaneja; U Grenander; L Matejic
Journal:  Stat Methods Med Res       Date:  1997-09       Impact factor: 3.021

Review 7.  Machine learning and radiology.

Authors:  Shijun Wang; Ronald M Summers
Journal:  Med Image Anal       Date:  2012-02-23       Impact factor: 8.545

8.  Mesial temporal sclerosis and temporal lobe epilepsy: MR imaging deformation-based segmentation of the hippocampus in five patients.

Authors:  R E Hogan; K E Mark; L Wang; S Joshi; M I Miller; R D Bucholz
Journal:  Radiology       Date:  2000-07       Impact factor: 11.105

9.  Fast and robust multi-atlas segmentation of brain magnetic resonance images.

Authors:  Jyrki Mp Lötjönen; Robin Wolz; Juha R Koikkalainen; Lennart Thurfjell; Gunhild Waldemar; Hilkka Soininen; Daniel Rueckert
Journal:  Neuroimage       Date:  2009-10-24       Impact factor: 6.556

10.  Prototypes for content-based image retrieval in clinical practice.

Authors:  Adrien Depeursinge; Benedikt Fischer; Henning Müller; Thomas M Deserno
Journal:  Open Med Inform J       Date:  2011-07-27
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  28 in total

Review 1.  Baby brain atlases.

Authors:  Kenichi Oishi; Linda Chang; Hao Huang
Journal:  Neuroimage       Date:  2018-04-03       Impact factor: 6.556

2.  Tools for multiple granularity analysis of brain MRI data for individualized image analysis.

Authors:  Aigerim Djamanakova; Xiaoying Tang; Xin Li; Andreia V Faria; Can Ceritoglu; Kenichi Oishi; Argye E Hillis; Marilyn Albert; Constantine Lyketsos; Michael I Miller; Susumu Mori
Journal:  Neuroimage       Date:  2014-06-27       Impact factor: 6.556

Review 3.  Quantitative evaluation of brain development using anatomical MRI and diffusion tensor imaging.

Authors:  Kenichi Oishi; Andreia V Faria; Shoko Yoshida; Linda Chang; Susumu Mori
Journal:  Int J Dev Neurosci       Date:  2013-06-21       Impact factor: 2.457

4.  Atlas-based Anatomical Modeling and Analysis of Heart Disease.

Authors:  Pau Medrano-Gracia; Brett R Cowan; Avan Suinesiaputra; Alistair A Young
Journal:  Drug Discov Today Dis Models       Date:  2014-07-31

Review 5.  Structural neuroimaging of the altered brain stemming from pediatric and adolescent hearing loss-Scientific and clinical challenges.

Authors:  J Tilak Ratnanather
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2019-12-04

6.  Using clinically acquired MRI to construct age-specific ADC atlases: Quantifying spatiotemporal ADC changes from birth to 6-year old.

Authors:  Yangming Ou; Lilla Zöllei; Kallirroi Retzepi; Victor Castro; Sara V Bates; Steve Pieper; Katherine P Andriole; Shawn N Murphy; Randy L Gollub; Patricia Ellen Grant
Journal:  Hum Brain Mapp       Date:  2017-03-31       Impact factor: 5.038

7.  Big heart data: advancing health informatics through data sharing in cardiovascular imaging.

Authors:  Avan Suinesiaputra; Pau Medrano-Gracia; Brett R Cowan; Alistair A Young
Journal:  IEEE J Biomed Health Inform       Date:  2014-11-14       Impact factor: 5.772

8.  Reprint of "Quantitative evaluation of brain development using anatomical MRI and diffusion tensor imaging".

Authors:  Kenichi Oishi; Andreia V Faria; Shoko Yoshida; Linda Chang; Susumu Mori
Journal:  Int J Dev Neurosci       Date:  2013-12-02       Impact factor: 2.457

9.  Brain extraction in pediatric ADC maps, toward characterizing neuro-development in multi-platform and multi-institution clinical images.

Authors:  Yangming Ou; Randy L Gollub; Kallirroi Retzepi; Nathaniel Reynolds; Rudolph Pienaar; Steve Pieper; Shawn N Murphy; P Ellen Grant; Lilla Zöllei
Journal:  Neuroimage       Date:  2015-08-07       Impact factor: 6.556

10.  Position Paper Computational Cardiology.

Authors:  Lambros Athanasiou; Farhad Rikhtegar Nezami; Elazer R Edelman
Journal:  IEEE J Biomed Health Inform       Date:  2018-10-19       Impact factor: 5.772

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