Literature DB >> 23640250

Live imaging, identifying, and tracking single cells in complex populations in vivo and ex vivo.

Minjung Kang1, Panagiotis Xenopoulos, Silvia Muñoz-Descalzo, Xinghua Lou, Anna-Katerina Hadjantonakis.   

Abstract

Advances in optical imaging technologies combined with the use of genetically encoded fluorescent proteins have enabled the visualization of stem cells over extensive periods of time in vivo and ex vivo. The generation of genetically encoded fluorescent protein reporters that are fused with subcellularly localized proteins, such as human histone H2B, has made it possible to direct fluorescent protein reporters to specific subcellular structures and identify single cells in complex populations. This facilitates the visualization of cellular behaviors such as division, movement, and apoptosis at a single-cell resolution and, in principle, allows the prospective and retrospective tracking towards determining the lineage of each cell.

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Year:  2013        PMID: 23640250      PMCID: PMC3967584          DOI: 10.1007/7651_2013_19

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  28 in total

1.  Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces.

Authors:  Alexandre Dufour; Vasily Shinin; Shahragim Tajbakhsh; Nancy Guillén-Aghion; Jean-Christophe Olivo-Marin; Christophe Zimmer
Journal:  IEEE Trans Image Process       Date:  2005-09       Impact factor: 10.856

2.  Nanog safeguards pluripotency and mediates germline development.

Authors:  Ian Chambers; Jose Silva; Douglas Colby; Jennifer Nichols; Bianca Nijmeijer; Morag Robertson; Jan Vrana; Ken Jones; Lars Grotewold; Austin Smith
Journal:  Nature       Date:  2007-12-20       Impact factor: 49.962

3.  Cell population tracking and lineage construction with spatiotemporal context.

Authors:  Kang Li; Eric D Miller; Mei Chen; Takeo Kanade; Lee E Weiss; Phil G Campbell
Journal:  Med Image Anal       Date:  2008-06-18       Impact factor: 8.545

4.  Particle filtering for multiple object tracking in dynamic fluorescence microscopy images: application to microtubule growth analysis.

Authors:  Ihor Smal; Katharina Draegestein; Niels Galjart; Wiro Niessen; Erik Meijering
Journal:  IEEE Trans Med Imaging       Date:  2008-06       Impact factor: 10.048

5.  A computational image analysis glossary for biologists.

Authors:  Adrienne H K Roeder; Alexandre Cunha; Michael C Burl; Elliot M Meyerowitz
Journal:  Development       Date:  2012-09       Impact factor: 6.868

6.  In vivo imaging and differential localization of lipid-modified GFP-variant fusions in embryonic stem cells and mice.

Authors:  Jerry M Rhee; Melinda K Pirity; Chantal S Lackan; Jonathan Z Long; Gen Kondoh; Junji Takeda; Anna-Katerina Hadjantonakis
Journal:  Genesis       Date:  2006-04       Impact factor: 2.487

Review 7.  Technicolour transgenics: imaging tools for functional genomics in the mouse.

Authors:  Anna-Katerina Hadjantonakis; Mary E Dickinson; Scott E Fraser; Virginia E Papaioannou
Journal:  Nat Rev Genet       Date:  2003-08       Impact factor: 53.242

8.  Automated cell lineage tracing in Caenorhabditis elegans.

Authors:  Zhirong Bao; John I Murray; Thomas Boyle; Siew Loon Ooi; Matthew J Sandel; Robert H Waterston
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-13       Impact factor: 11.205

9.  Identification and characterization of subpopulations in undifferentiated ES cell culture.

Authors:  Yayoi Toyooka; Daisuke Shimosato; Kazuhiro Murakami; Kadue Takahashi; Hitoshi Niwa
Journal:  Development       Date:  2008-03       Impact factor: 6.868

10.  CellProfiler: image analysis software for identifying and quantifying cell phenotypes.

Authors:  Anne E Carpenter; Thouis R Jones; Michael R Lamprecht; Colin Clarke; In Han Kang; Ola Friman; David A Guertin; Joo Han Chang; Robert A Lindquist; Jason Moffat; Polina Golland; David M Sabatini
Journal:  Genome Biol       Date:  2006-10-31       Impact factor: 13.583

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  6 in total

1.  Fbxo2VHC mouse and embryonic stem cell reporter lines delineate in vitro-generated inner ear sensory epithelia cells and enable otic lineage selection and Cre-recombination.

Authors:  Byron H Hartman; Robert Bӧscke; Daniel C Ellwanger; Sawa Keymeulen; Mirko Scheibinger; Stefan Heller
Journal:  Dev Biol       Date:  2018-09-01       Impact factor: 3.582

2.  GATA6 levels modulate primitive endoderm cell fate choice and timing in the mouse blastocyst.

Authors:  Nadine Schrode; Néstor Saiz; Stefano Di Talia; Anna-Katerina Hadjantonakis
Journal:  Dev Cell       Date:  2014-05-15       Impact factor: 12.270

3.  A rapid and efficient 2D/3D nuclear segmentation method for analysis of early mouse embryo and stem cell image data.

Authors:  Xinghua Lou; Minjung Kang; Panagiotis Xenopoulos; Silvia Muñoz-Descalzo; Anna-Katerina Hadjantonakis
Journal:  Stem Cell Reports       Date:  2014-03-11       Impact factor: 7.765

4.  Cell fate clusters in ICM organoids arise from cell fate heredity and division: a modelling approach.

Authors:  Tim Liebisch; Armin Drusko; Biena Mathew; Ernst H K Stelzer; Sabine C Fischer; Franziska Matthäus
Journal:  Sci Rep       Date:  2020-12-29       Impact factor: 4.379

Review 5.  Theranostic Interpolation of Genomic Instability in Breast Cancer.

Authors:  Rabia Rasool; Inam Ullah; Bismillah Mubeen; Sultan Alshehri; Syed Sarim Imam; Mohammed M Ghoneim; Sami I Alzarea; Fahad A Al-Abbasi; Bibi Nazia Murtaza; Imran Kazmi; Muhammad Shahid Nadeem
Journal:  Int J Mol Sci       Date:  2022-02-07       Impact factor: 5.923

6.  The transition from local to global patterns governs the differentiation of mouse blastocysts.

Authors:  Sabine C Fischer; Elena Corujo-Simon; Joaquin Lilao-Garzon; Ernst H K Stelzer; Silvia Muñoz-Descalzo
Journal:  PLoS One       Date:  2020-05-15       Impact factor: 3.240

  6 in total

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