Literature DB >> 23634141

5-(4-Fluoro-phen-yl)-3-[5-methyl-1-(4-methyl-phen-yl)-1H-1,2,3-triazol-4-yl]-N-phenyl-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Bakr F Abdel-Wahab1, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C26H23FN6S, the n class="Chemical">pyrazole ring has an envelope conformation, with the methine C atom being the flap atom. The thio-urea group is close to being coplanar with the pyrazole N atoms [N-N-C-S torsion angle = 176.78 (15)°], which allows for an intra-molecular N-H⋯N hydrogen bond; the connected triazole ring is nearly coplanar with this ring [N-C-C-N = -172.65 (19)°]. There is a significant twist between the pyrazole ring and attached fluoro-benzene ring [N-C-C-C = -18.8 (3)°] and a greater twist between triazole and attached tolyl ring [dihedral angle = 58.25 (14)°]. In the crystal, supra-molecular chains aligned along [40,10] are consolidated by π-π inter-actions between the triazole and phenyl rings [centroid-centroid distance = 3.7053 (13) Å].

Entities:  

Year:  2013        PMID: 23634141      PMCID: PMC3629654          DOI: 10.1107/S1600536813008155

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity and synthesis of related compounds, see: Abdel-Wahab, Abdel-Latif et al. (2012 ▶). For a related structure, see: Abdel-Wahab, Mohamed et al. (2012 ▶).

Experimental

Crystal data

C26H23FN6S M = 470.56 Monoclinic, a = 6.5449 (5) Å b = 26.1030 (17) Å c = 14.3818 (8) Å β = 100.604 (7)° V = 2415.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 295 K 0.40 × 0.30 × 0.20 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.802, T max = 1.000 15173 measured reflections 5578 independent reflections 3313 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.162 S = 1.03 5578 reflections 313 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813008155/hg5303sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813008155/hg5303Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813008155/hg5303Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H23FN6SF(000) = 984
Mr = 470.56Dx = 1.294 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2937 reflections
a = 6.5449 (5) Åθ = 2.9–27.5°
b = 26.1030 (17) ŵ = 0.17 mm1
c = 14.3818 (8) ÅT = 295 K
β = 100.604 (7)°Prism, colourless
V = 2415.0 (3) Å30.40 × 0.30 × 0.20 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector5578 independent reflections
Radiation source: SuperNova (Mo) X-ray Source3313 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.040
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.9°
ω scanh = −8→8
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −33→33
Tmin = 0.802, Tmax = 1.000l = −18→18
15173 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.162H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0643P)2 + 0.3514P] where P = (Fo2 + 2Fc2)/3
5578 reflections(Δ/σ)max = 0.001
313 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.28247 (11)0.59566 (2)0.26576 (4)0.0660 (2)
F10.4921 (5)0.53780 (11)0.71572 (17)0.1882 (13)
N10.2779 (3)0.69941 (8)0.25175 (14)0.0581 (5)
N20.5580 (3)0.66351 (7)0.34286 (12)0.0538 (5)
N30.6368 (3)0.71314 (7)0.35592 (12)0.0519 (5)
N41.1621 (3)0.75227 (8)0.45157 (14)0.0624 (5)
N51.2414 (3)0.79826 (8)0.45671 (15)0.0662 (6)
N61.0814 (3)0.83112 (8)0.42485 (12)0.0584 (5)
C10.0777 (3)0.71154 (8)0.20191 (14)0.0503 (5)
C20.0342 (4)0.76336 (9)0.18895 (15)0.0580 (6)
H20.13730.78730.21050.070*
C3−0.1592 (4)0.77990 (10)0.14473 (15)0.0635 (7)
H3A−0.18600.81480.13710.076*
C4−0.3132 (4)0.74477 (11)0.11172 (15)0.0655 (7)
H4−0.44420.75570.08190.079*
C5−0.2697 (4)0.69365 (11)0.12361 (16)0.0659 (7)
H5−0.37290.66990.10120.079*
C6−0.0762 (4)0.67637 (9)0.16809 (15)0.0608 (6)
H6−0.05000.64140.17510.073*
C70.3712 (4)0.65505 (8)0.28600 (14)0.0504 (5)
C80.7040 (3)0.62449 (9)0.39009 (14)0.0532 (6)
H80.72410.59760.34510.064*
C90.9037 (3)0.65642 (9)0.41746 (16)0.0572 (6)
H9A0.96440.65200.48370.069*
H9B1.00560.64720.37920.069*
C100.8281 (3)0.70984 (9)0.39768 (14)0.0503 (5)
C110.6339 (4)0.60126 (9)0.47522 (15)0.0547 (6)
C120.4899 (4)0.62432 (10)0.51996 (17)0.0666 (7)
H120.42420.65430.49560.080*
C130.4429 (5)0.60252 (14)0.6021 (2)0.0936 (10)
H130.34700.61790.63360.112*
C140.5405 (7)0.55819 (17)0.6353 (2)0.1117 (13)
C150.6779 (7)0.53446 (15)0.5924 (3)0.1172 (13)
H150.74040.50410.61640.141*
C160.7249 (5)0.55604 (11)0.5117 (2)0.0877 (9)
H160.82020.53980.48100.105*
C170.9534 (3)0.75537 (9)0.41700 (14)0.0520 (5)
C180.8996 (3)0.80599 (9)0.39990 (14)0.0530 (5)
C190.6961 (4)0.83117 (10)0.36692 (18)0.0669 (7)
H19A0.70830.86720.38020.100*
H19B0.59400.81650.39910.100*
H19C0.65430.82610.30000.100*
C201.1213 (4)0.88469 (10)0.41824 (18)0.0636 (6)
C211.2087 (4)0.91154 (11)0.4967 (2)0.0790 (8)
H211.24410.89530.55500.095*
C221.2439 (5)0.96392 (12)0.4878 (3)0.0979 (10)
H221.30190.98260.54130.117*
C231.1953 (5)0.98862 (13)0.4024 (3)0.1023 (11)
C241.1078 (6)0.95997 (14)0.3244 (3)0.1113 (12)
H241.07300.97580.26570.134*
C251.0717 (5)0.90862 (12)0.3320 (2)0.0926 (10)
H251.01340.88990.27860.111*
C261.2352 (5)1.04560 (13)0.3937 (4)0.151 (2)
H26A1.27151.06040.45560.227*
H26B1.11211.06190.35990.227*
H26C1.34731.05060.35990.227*
H30.355 (5)0.7242 (10)0.2690 (19)0.080 (9)*
U11U22U33U12U13U23
S10.0670 (5)0.0540 (4)0.0691 (4)0.0000 (3)−0.0082 (3)−0.0048 (3)
F10.231 (3)0.219 (3)0.1311 (18)−0.018 (2)0.0773 (19)0.0845 (19)
N10.0465 (12)0.0515 (12)0.0686 (12)−0.0016 (9)−0.0094 (10)0.0012 (10)
N20.0447 (11)0.0541 (11)0.0577 (10)−0.0005 (9)−0.0038 (9)0.0055 (9)
N30.0419 (11)0.0577 (11)0.0533 (10)−0.0040 (9)0.0018 (9)0.0021 (8)
N40.0391 (11)0.0766 (14)0.0691 (12)−0.0062 (10)0.0038 (9)0.0110 (10)
N50.0392 (11)0.0766 (14)0.0799 (13)−0.0071 (10)0.0033 (10)0.0126 (11)
N60.0420 (11)0.0739 (13)0.0585 (10)−0.0079 (10)0.0069 (9)0.0072 (10)
C10.0435 (13)0.0598 (14)0.0438 (10)0.0014 (10)−0.0018 (9)0.0020 (10)
C20.0570 (15)0.0587 (14)0.0543 (12)0.0013 (11)−0.0001 (11)0.0060 (10)
C30.0608 (16)0.0713 (16)0.0552 (13)0.0141 (13)0.0023 (12)0.0123 (12)
C40.0492 (15)0.0914 (19)0.0517 (12)0.0119 (14)−0.0018 (11)0.0060 (13)
C50.0490 (15)0.0826 (18)0.0605 (13)−0.0044 (13)−0.0046 (12)−0.0059 (13)
C60.0532 (15)0.0620 (14)0.0617 (13)0.0002 (12)−0.0042 (11)−0.0070 (11)
C70.0473 (13)0.0569 (13)0.0445 (10)0.0017 (10)0.0020 (10)0.0008 (10)
C80.0475 (13)0.0581 (14)0.0511 (11)0.0086 (10)0.0013 (10)0.0023 (10)
C90.0400 (13)0.0709 (15)0.0592 (12)0.0056 (11)0.0049 (10)0.0081 (11)
C100.0392 (12)0.0660 (14)0.0450 (10)0.0006 (10)0.0059 (9)0.0041 (10)
C110.0489 (14)0.0561 (13)0.0555 (12)−0.0058 (11)−0.0001 (11)0.0023 (10)
C120.0601 (16)0.0752 (17)0.0637 (14)−0.0069 (13)0.0092 (13)−0.0015 (13)
C130.085 (2)0.122 (3)0.0793 (19)−0.018 (2)0.0293 (17)−0.0031 (19)
C140.124 (3)0.132 (3)0.081 (2)−0.026 (3)0.023 (2)0.041 (2)
C150.131 (3)0.108 (3)0.111 (3)0.013 (2)0.020 (3)0.055 (2)
C160.092 (2)0.082 (2)0.0896 (19)0.0178 (17)0.0177 (17)0.0252 (17)
C170.0385 (12)0.0715 (15)0.0453 (10)−0.0048 (11)0.0058 (9)0.0062 (10)
C180.0407 (13)0.0708 (15)0.0479 (11)−0.0051 (11)0.0088 (10)0.0043 (11)
C190.0452 (14)0.0740 (17)0.0788 (16)0.0009 (12)0.0045 (12)0.0087 (13)
C200.0442 (14)0.0697 (16)0.0753 (16)−0.0098 (12)0.0070 (12)0.0136 (13)
C210.0627 (18)0.0807 (19)0.0870 (18)−0.0114 (14)−0.0036 (15)0.0070 (15)
C220.062 (2)0.079 (2)0.142 (3)−0.0133 (16)−0.009 (2)−0.003 (2)
C230.0480 (17)0.078 (2)0.175 (3)−0.0001 (15)0.004 (2)0.039 (2)
C240.088 (3)0.112 (3)0.129 (3)−0.015 (2)0.007 (2)0.055 (2)
C250.096 (2)0.097 (2)0.0811 (18)−0.0215 (18)0.0057 (17)0.0258 (17)
C260.076 (2)0.074 (2)0.291 (6)−0.0018 (18)−0.002 (3)0.058 (3)
S1—C71.662 (2)C10—C171.442 (3)
F1—C141.363 (4)C11—C121.374 (3)
N1—C71.358 (3)C11—C161.381 (3)
N1—C11.409 (3)C12—C131.395 (4)
N1—H30.83 (3)C12—H120.9300
N2—C71.358 (3)C13—C141.365 (5)
N2—N31.394 (2)C13—H130.9300
N2—C81.474 (3)C14—C151.333 (5)
N3—C101.288 (3)C15—C161.375 (4)
N4—N51.305 (3)C15—H150.9300
N4—C171.367 (3)C16—H160.9300
N5—N61.366 (3)C17—C181.378 (3)
N6—C181.348 (3)C18—C191.482 (3)
N6—C201.429 (3)C19—H19A0.9600
C1—C61.383 (3)C19—H19B0.9600
C1—C21.388 (3)C19—H19C0.9600
C2—C31.377 (3)C20—C211.361 (4)
C2—H20.9300C20—C251.373 (4)
C3—C41.381 (4)C21—C221.396 (4)
C3—H3A0.9300C21—H210.9300
C4—C51.368 (4)C22—C231.372 (5)
C4—H40.9300C22—H220.9300
C5—C61.385 (3)C23—C241.382 (5)
C5—H50.9300C23—C261.519 (4)
C6—H60.9300C24—C251.369 (4)
C8—C111.511 (3)C24—H240.9300
C8—C91.539 (3)C25—H250.9300
C8—H80.9800C26—H26A0.9600
C9—C101.489 (3)C26—H26B0.9600
C9—H9A0.9700C26—H26C0.9600
C9—H9B0.9700
C7—N1—C1133.6 (2)C11—C12—C13119.7 (3)
C7—N1—H3110 (2)C11—C12—H12120.2
C1—N1—H3116 (2)C13—C12—H12120.2
C7—N2—N3120.12 (17)C14—C13—C12118.7 (3)
C7—N2—C8126.89 (18)C14—C13—H13120.7
N3—N2—C8112.83 (17)C12—C13—H13120.7
C10—N3—N2107.71 (17)C15—C14—F1119.6 (4)
N5—N4—C17109.1 (2)C15—C14—C13123.0 (3)
N4—N5—N6106.63 (18)F1—C14—C13117.5 (4)
C18—N6—N5111.6 (2)C14—C15—C16118.4 (3)
C18—N6—C20128.4 (2)C14—C15—H15120.8
N5—N6—C20119.91 (19)C16—C15—H15120.8
C6—C1—C2118.8 (2)C15—C16—C11121.5 (3)
C6—C1—N1125.3 (2)C15—C16—H16119.2
C2—C1—N1115.9 (2)C11—C16—H16119.2
C3—C2—C1121.1 (2)N4—C17—C18109.1 (2)
C3—C2—H2119.5N4—C17—C10121.1 (2)
C1—C2—H2119.5C18—C17—C10129.7 (2)
C2—C3—C4120.1 (2)N6—C18—C17103.6 (2)
C2—C3—H3A120.0N6—C18—C19124.5 (2)
C4—C3—H3A120.0C17—C18—C19131.9 (2)
C5—C4—C3118.9 (2)C18—C19—H19A109.5
C5—C4—H4120.6C18—C19—H19B109.5
C3—C4—H4120.6H19A—C19—H19B109.5
C4—C5—C6121.8 (2)C18—C19—H19C109.5
C4—C5—H5119.1H19A—C19—H19C109.5
C6—C5—H5119.1H19B—C19—H19C109.5
C1—C6—C5119.4 (2)C21—C20—C25120.5 (3)
C1—C6—H6120.3C21—C20—N6120.2 (2)
C5—C6—H6120.3C25—C20—N6119.3 (2)
N1—C7—N2111.98 (19)C20—C21—C22118.6 (3)
N1—C7—S1127.76 (17)C20—C21—H21120.7
N2—C7—S1120.26 (16)C22—C21—H21120.7
N2—C8—C11112.53 (19)C23—C22—C21121.8 (3)
N2—C8—C9101.03 (17)C23—C22—H22119.1
C11—C8—C9112.35 (18)C21—C22—H22119.1
N2—C8—H8110.2C22—C23—C24117.8 (3)
C11—C8—H8110.2C22—C23—C26121.3 (4)
C9—C8—H8110.2C24—C23—C26121.0 (4)
C10—C9—C8102.80 (18)C25—C24—C23121.1 (3)
C10—C9—H9A111.2C25—C24—H24119.4
C8—C9—H9A111.2C23—C24—H24119.4
C10—C9—H9B111.2C24—C25—C20120.1 (3)
C8—C9—H9B111.2C24—C25—H25119.9
H9A—C9—H9B109.1C20—C25—H25119.9
N3—C10—C17120.3 (2)C23—C26—H26A109.5
N3—C10—C9114.3 (2)C23—C26—H26B109.5
C17—C10—C9125.3 (2)H26A—C26—H26B109.5
C12—C11—C16118.8 (2)C23—C26—H26C109.5
C12—C11—C8122.7 (2)H26A—C26—H26C109.5
C16—C11—C8118.5 (2)H26B—C26—H26C109.5
C7—N2—N3—C10−168.49 (19)C11—C12—C13—C14−0.8 (4)
C8—N2—N3—C107.2 (2)C12—C13—C14—C15−0.5 (6)
C17—N4—N5—N6−0.1 (2)C12—C13—C14—F1179.8 (3)
N4—N5—N6—C180.4 (3)F1—C14—C15—C16−179.6 (3)
N4—N5—N6—C20−177.4 (2)C13—C14—C15—C160.8 (7)
C7—N1—C1—C6−5.6 (4)C14—C15—C16—C110.2 (6)
C7—N1—C1—C2172.6 (2)C12—C11—C16—C15−1.4 (4)
C6—C1—C2—C31.1 (3)C8—C11—C16—C15175.9 (3)
N1—C1—C2—C3−177.3 (2)N5—N4—C17—C18−0.2 (3)
C1—C2—C3—C4−0.5 (3)N5—N4—C17—C10175.68 (19)
C2—C3—C4—C5−0.1 (4)N3—C10—C17—N4−172.65 (19)
C3—C4—C5—C60.3 (4)C9—C10—C17—N43.8 (3)
C2—C1—C6—C5−0.9 (3)N3—C10—C17—C182.3 (3)
N1—C1—C6—C5177.3 (2)C9—C10—C17—C18178.7 (2)
C4—C5—C6—C10.3 (4)N5—N6—C18—C17−0.5 (2)
C1—N1—C7—N2−170.1 (2)C20—N6—C18—C17177.1 (2)
C1—N1—C7—S19.8 (4)N5—N6—C18—C19177.0 (2)
N3—N2—C7—N1−3.3 (3)C20—N6—C18—C19−5.5 (4)
C8—N2—C7—N1−178.33 (19)N4—C17—C18—N60.4 (2)
N3—N2—C7—S1176.78 (15)C10—C17—C18—N6−175.0 (2)
C8—N2—C7—S11.7 (3)N4—C17—C18—C19−176.8 (2)
C7—N2—C8—C11−75.8 (3)C10—C17—C18—C197.8 (4)
N3—N2—C8—C11108.8 (2)C18—N6—C20—C21123.5 (3)
C7—N2—C8—C9164.2 (2)N5—N6—C20—C21−59.1 (3)
N3—N2—C8—C9−11.2 (2)C18—N6—C20—C25−56.8 (4)
N2—C8—C9—C1010.3 (2)N5—N6—C20—C25120.5 (3)
C11—C8—C9—C10−109.9 (2)C25—C20—C21—C220.9 (4)
N2—N3—C10—C17177.36 (18)N6—C20—C21—C22−179.5 (3)
N2—N3—C10—C90.6 (2)C20—C21—C22—C23−0.8 (5)
C8—C9—C10—N3−7.4 (2)C21—C22—C23—C240.5 (5)
C8—C9—C10—C17175.99 (19)C21—C22—C23—C26−179.8 (3)
N2—C8—C11—C12−18.8 (3)C22—C23—C24—C25−0.3 (5)
C9—C8—C11—C1294.5 (3)C26—C23—C24—C25180.0 (3)
N2—C8—C11—C16164.0 (2)C23—C24—C25—C200.4 (6)
C9—C8—C11—C16−82.8 (3)C21—C20—C25—C24−0.7 (5)
C16—C11—C12—C131.7 (4)N6—C20—C25—C24179.7 (3)
C8—C11—C12—C13−175.6 (2)
D—H···AD—HH···AD···AD—H···A
N1—H3···N30.83 (3)2.05 (3)2.568 (3)120 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H3⋯N30.83 (3)2.05 (3)2.568 (3)120 (2)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Design and synthesis of new 4-pyrazolin-3-yl-1,2,3-triazoles and 1,2,3-triazol-4-yl-pyrazolin-1-ylthiazoles as potential antimicrobial agents.

Authors:  Bakr F Abdel-Wahab; Ehab Abdel-Latif; Hanan A Mohamed; Ghada E A Awad
Journal:  Eur J Med Chem       Date:  2012-03-23       Impact factor: 6.514

3.  3-[5-Methyl-1-(4-methyl-phen-yl)-1H-1,2,3-triazol-4-yl]-N-phenyl-5-[4-(piperidin-1-yl)phen-yl]-4,5-dihydro-1H-pyrazole-1-carbothio-amide dimethyl-formamide hemisolvate.

Authors:  Bakr F Abdel-Wahab; Hanan A Mohamed; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-02
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.