Literature DB >> 23634111

5-Methyl-N'-[(3Z)-2-oxo-2,3-dihydro-1H-indol-3-yl-idene]-1-phenyl-1H-1,2,3-triazole-4-carbohydrazide.

Hanan A Mohamed1, Bakr F Abdel-Wahab, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C18H14N6O2, the benzene ring is slightly twisted out of the plane of the 1,2,3-triazole ring (r.m.s. deviation = 0.010 Å), forming a dihedral angle of 6.20 (13)°. The nine non-H ring atoms of the fused five- and six-membered ring system are almost coplanar (r.m.s. deviation = 0.032 Å). The near coplanarity in the central residue is consolidated by an intra-molecular bifurcated N-H⋯(O,N) hydrogen bond. The conformation about the N=C bond is Z. In the crystal, supra-molecular chains along [101] are sustained by N-H⋯O hydrogen bonds and C-H⋯O inter-actions. These are consolidated into a three-dimensional architecture by C-H⋯π and π-π inter-actions; the latter occur between centrosymmetrically related 1,2,3-triazole rings [centroid-centroid distance = 3.6056 (14) Å].

Entities:  

Year:  2013        PMID: 23634111      PMCID: PMC3629624          DOI: 10.1107/S1600536813007502

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 1,2,3-triazoles, see: Abdel-Wahab et al. (2012 ▶); Jordão et al. (2011 ▶).

Experimental

Crystal data

C18H14N6O2 M = 346.35 Monoclinic, a = 7.1835 (8) Å b = 18.620 (2) Å c = 12.2949 (11) Å β = 101.676 (11)° V = 1610.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 295 K 0.25 × 0.05 × 0.05 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.971, T max = 1.000 8876 measured reflections 3715 independent reflections 2131 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.147 S = 1.03 3715 reflections 244 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813007502/hb7059sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813007502/hb7059Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813007502/hb7059Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H14N6O2F(000) = 720
Mr = 346.35Dx = 1.428 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1697 reflections
a = 7.1835 (8) Åθ = 2.9–27.5°
b = 18.620 (2) ŵ = 0.10 mm1
c = 12.2949 (11) ÅT = 295 K
β = 101.676 (11)°Prism, yellow
V = 1610.5 (3) Å30.25 × 0.05 × 0.05 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector3715 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2131 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.039
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 3.0°
ω scanh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −21→24
Tmin = 0.971, Tmax = 1.000l = −15→16
8876 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0482P)2 + 0.2228P] where P = (Fo2 + 2Fc2)/3
3715 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.16 e Å3
2 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5195 (3)0.58729 (9)0.26022 (12)0.0597 (5)
O20.8162 (3)0.71122 (10)0.60828 (12)0.0613 (5)
N10.7254 (2)0.41347 (10)0.47664 (13)0.0418 (5)
N20.8247 (3)0.45889 (11)0.55553 (14)0.0485 (5)
N30.7912 (3)0.52406 (11)0.52030 (14)0.0461 (5)
N40.6750 (3)0.64843 (10)0.41239 (14)0.0446 (5)
N50.6338 (3)0.71428 (10)0.36535 (14)0.0429 (5)
N60.8130 (3)0.83398 (12)0.58399 (15)0.0517 (5)
C10.7454 (3)0.33768 (13)0.49580 (18)0.0430 (6)
C20.7219 (4)0.28982 (14)0.4094 (2)0.0553 (7)
H20.69310.30620.33650.066*
C30.7413 (4)0.21701 (15)0.4314 (2)0.0655 (8)
H30.72290.18440.37290.079*
C40.7873 (4)0.19263 (16)0.5383 (3)0.0670 (8)
H4A0.80080.14370.55270.080*
C50.8131 (4)0.24064 (16)0.6236 (2)0.0669 (8)
H50.84570.22400.69620.080*
C60.7917 (4)0.31390 (15)0.60440 (19)0.0558 (7)
H6A0.80810.34620.66320.067*
C70.6714 (3)0.52181 (12)0.41830 (16)0.0390 (5)
C80.6253 (3)0.45209 (13)0.39001 (16)0.0397 (5)
C90.4854 (3)0.42228 (13)0.29457 (18)0.0509 (6)
H9A0.39600.45900.26420.076*
H9B0.41900.38280.31950.076*
H9C0.55090.40590.23850.076*
C100.6140 (3)0.58757 (12)0.35507 (17)0.0416 (6)
C110.7793 (3)0.76558 (13)0.55151 (18)0.0466 (6)
C120.6838 (3)0.76850 (12)0.43033 (16)0.0395 (5)
C130.6616 (3)0.84409 (12)0.40176 (16)0.0392 (5)
C140.5752 (3)0.88056 (13)0.30717 (17)0.0464 (6)
H140.51440.85570.24430.056*
C150.5807 (3)0.95496 (14)0.30778 (19)0.0531 (7)
H150.52340.98040.24470.064*
C160.6707 (4)0.99165 (14)0.4013 (2)0.0595 (7)
H160.67481.04160.39970.071*
C170.7551 (4)0.95587 (14)0.49753 (19)0.0565 (7)
H170.81500.98090.56040.068*
C180.7469 (3)0.88237 (14)0.49662 (17)0.0438 (6)
H40.739 (3)0.6463 (14)0.4827 (10)0.063 (8)*
H60.876 (4)0.8480 (15)0.6497 (13)0.087 (10)*
U11U22U33U12U13U23
O10.0920 (12)0.0383 (11)0.0371 (8)0.0049 (9)−0.0148 (8)−0.0004 (7)
O20.0829 (12)0.0428 (11)0.0470 (9)−0.0027 (10)−0.0136 (8)0.0080 (8)
N10.0514 (11)0.0315 (11)0.0394 (9)0.0026 (9)0.0015 (8)0.0026 (8)
N20.0584 (12)0.0370 (12)0.0436 (10)0.0009 (10)−0.0049 (9)0.0016 (9)
N30.0559 (11)0.0359 (12)0.0417 (10)0.0019 (10)−0.0020 (9)0.0023 (8)
N40.0587 (11)0.0312 (12)0.0382 (10)0.0008 (10)−0.0041 (9)0.0025 (8)
N50.0538 (11)0.0290 (11)0.0416 (10)0.0017 (9)−0.0004 (8)0.0019 (8)
N60.0685 (13)0.0405 (13)0.0380 (10)−0.0032 (11)−0.0087 (9)−0.0057 (9)
C10.0489 (12)0.0282 (13)0.0512 (13)0.0054 (11)0.0087 (10)0.0081 (10)
C20.0716 (16)0.0370 (16)0.0564 (14)0.0058 (14)0.0105 (12)0.0031 (12)
C30.0800 (19)0.0370 (16)0.0777 (18)0.0060 (15)0.0119 (15)−0.0003 (14)
C40.0746 (18)0.0349 (16)0.090 (2)0.0088 (14)0.0119 (16)0.0152 (15)
C50.0797 (19)0.0528 (19)0.0660 (16)0.0160 (16)0.0095 (14)0.0251 (15)
C60.0688 (16)0.0438 (16)0.0517 (14)0.0122 (14)0.0051 (12)0.0096 (12)
C70.0468 (12)0.0318 (13)0.0350 (10)0.0039 (10)0.0005 (9)−0.0010 (9)
C80.0458 (12)0.0350 (14)0.0364 (11)0.0028 (11)0.0041 (9)0.0036 (10)
C90.0614 (14)0.0355 (14)0.0495 (13)−0.0020 (12)−0.0038 (11)−0.0025 (11)
C100.0505 (12)0.0317 (13)0.0395 (11)0.0029 (11)0.0018 (10)−0.0014 (10)
C110.0546 (13)0.0393 (15)0.0399 (12)−0.0006 (12)−0.0047 (10)0.0005 (11)
C120.0438 (12)0.0315 (13)0.0387 (11)−0.0017 (10)−0.0021 (9)−0.0024 (10)
C130.0440 (11)0.0333 (13)0.0379 (11)−0.0030 (11)0.0026 (9)−0.0032 (9)
C140.0548 (13)0.0380 (14)0.0422 (12)−0.0026 (12)0.0003 (10)−0.0018 (11)
C150.0683 (16)0.0372 (15)0.0491 (13)0.0008 (13)0.0003 (12)0.0063 (11)
C160.0813 (18)0.0311 (14)0.0621 (16)−0.0035 (14)0.0051 (14)−0.0005 (12)
C170.0749 (17)0.0382 (15)0.0510 (14)−0.0083 (14)−0.0004 (12)−0.0101 (12)
C180.0532 (13)0.0348 (14)0.0402 (11)−0.0026 (11)0.0022 (10)−0.0019 (10)
O1—C101.225 (2)C5—C61.388 (4)
O2—C111.228 (3)C5—H50.9300
N1—C81.363 (2)C6—H6A0.9300
N1—N21.373 (2)C7—C81.367 (3)
N1—C11.433 (3)C7—C101.464 (3)
N2—N31.294 (3)C8—C91.490 (3)
N3—C71.370 (2)C9—H9A0.9600
N4—C101.359 (3)C9—H9B0.9600
N4—N51.363 (2)C9—H9C0.9600
N4—H40.893 (10)C11—C121.510 (3)
N5—C121.292 (3)C12—C131.452 (3)
N6—C111.342 (3)C13—C141.381 (3)
N6—C181.409 (3)C13—C181.398 (3)
N6—H60.881 (10)C14—C151.386 (3)
C1—C21.370 (3)C14—H140.9300
C1—C61.382 (3)C15—C161.381 (3)
C2—C31.384 (3)C15—H150.9300
C2—H20.9300C16—C171.386 (3)
C3—C41.366 (4)C16—H160.9300
C3—H30.9300C17—C181.370 (4)
C4—C51.362 (4)C17—H170.9300
C4—H4A0.9300
C8—N1—N2110.09 (18)C7—C8—C9130.12 (19)
C8—N1—C1131.86 (18)C8—C9—H9A109.5
N2—N1—C1118.04 (16)C8—C9—H9B109.5
N3—N2—N1107.84 (15)H9A—C9—H9B109.5
N2—N3—C7108.50 (18)C8—C9—H9C109.5
C10—N4—N5120.71 (17)H9A—C9—H9C109.5
C10—N4—H4120.9 (17)H9B—C9—H9C109.5
N5—N4—H4118.4 (17)O1—C10—N4123.7 (2)
C12—N5—N4115.54 (17)O1—C10—C7123.0 (2)
C11—N6—C18111.56 (17)N4—C10—C7113.29 (17)
C11—N6—H6126 (2)O2—C11—N6127.5 (2)
C18—N6—H6123 (2)O2—C11—C12126.4 (2)
C2—C1—C6120.5 (2)N6—C11—C12106.15 (19)
C2—C1—N1121.36 (19)N5—C12—C13127.19 (18)
C6—C1—N1118.1 (2)N5—C12—C11126.6 (2)
C1—C2—C3119.6 (2)C13—C12—C11106.22 (18)
C1—C2—H2120.2C14—C13—C18119.9 (2)
C3—C2—H2120.2C14—C13—C12133.57 (19)
C4—C3—C2120.6 (3)C18—C13—C12106.52 (17)
C4—C3—H3119.7C13—C14—C15118.6 (2)
C2—C3—H3119.7C13—C14—H14120.7
C5—C4—C3119.4 (3)C15—C14—H14120.7
C5—C4—H4A120.3C16—C15—C14120.5 (2)
C3—C4—H4A120.3C16—C15—H15119.8
C4—C5—C6121.4 (2)C14—C15—H15119.8
C4—C5—H5119.3C15—C16—C17121.6 (2)
C6—C5—H5119.3C15—C16—H16119.2
C1—C6—C5118.4 (3)C17—C16—H16119.2
C1—C6—H6A120.8C18—C17—C16117.6 (2)
C5—C6—H6A120.8C18—C17—H17121.2
C8—C7—N3109.67 (19)C16—C17—H17121.2
C8—C7—C10129.15 (18)C17—C18—C13121.8 (2)
N3—C7—C10121.2 (2)C17—C18—N6128.7 (2)
N1—C8—C7103.88 (17)C13—C18—N6109.5 (2)
N1—C8—C9125.7 (2)
C8—N1—N2—N3−0.7 (3)N3—C7—C10—O1174.1 (2)
C1—N1—N2—N3178.00 (19)C8—C7—C10—N4175.3 (2)
N1—N2—N3—C7−0.4 (2)N3—C7—C10—N4−6.3 (3)
C10—N4—N5—C12174.1 (2)C18—N6—C11—O2−178.5 (2)
C8—N1—C1—C225.8 (4)C18—N6—C11—C120.8 (3)
N2—N1—C1—C2−152.5 (2)N4—N5—C12—C13178.4 (2)
C8—N1—C1—C6−155.0 (2)N4—N5—C12—C11−0.9 (3)
N2—N1—C1—C626.7 (3)O2—C11—C12—N5−3.6 (4)
C6—C1—C2—C31.2 (4)N6—C11—C12—N5177.0 (2)
N1—C1—C2—C3−179.6 (2)O2—C11—C12—C13176.9 (2)
C1—C2—C3—C4−1.3 (4)N6—C11—C12—C13−2.4 (3)
C2—C3—C4—C50.3 (4)N5—C12—C13—C145.4 (4)
C3—C4—C5—C60.7 (4)C11—C12—C13—C14−175.2 (2)
C2—C1—C6—C5−0.2 (4)N5—C12—C13—C18−176.4 (2)
N1—C1—C6—C5−179.4 (2)C11—C12—C13—C183.1 (2)
C4—C5—C6—C1−0.8 (4)C18—C13—C14—C152.1 (3)
N2—N3—C7—C81.3 (3)C12—C13—C14—C15−179.9 (2)
N2—N3—C7—C10−177.4 (2)C13—C14—C15—C16−0.1 (4)
N2—N1—C8—C71.4 (2)C14—C15—C16—C17−1.1 (4)
C1—N1—C8—C7−177.0 (2)C15—C16—C17—C180.3 (4)
N2—N1—C8—C9−173.2 (2)C16—C17—C18—C131.7 (4)
C1—N1—C8—C98.4 (4)C16—C17—C18—N6−176.8 (2)
N3—C7—C8—N1−1.6 (2)C14—C13—C18—C17−2.9 (4)
C10—C7—C8—N1176.9 (2)C12—C13—C18—C17178.5 (2)
N3—C7—C8—C9172.6 (2)C14—C13—C18—N6175.9 (2)
C10—C7—C8—C9−8.8 (4)C12—C13—C18—N6−2.7 (3)
N5—N4—C10—O1−0.5 (4)C11—N6—C18—C17179.9 (3)
N5—N4—C10—C7179.92 (19)C11—N6—C18—C131.2 (3)
C8—C7—C10—O1−4.3 (4)
D—H···AD—HH···AD···AD—H···A
N4—H4···O20.89 (1)1.95 (2)2.685 (2)138 (2)
N4—H4···N30.89 (1)2.34 (2)2.715 (3)105 (2)
N6—H6···O1i0.88 (1)1.95 (2)2.783 (2)157 (3)
C14—H14···O2ii0.932.333.244 (3)168
C9—H9C···Cg1iii0.962.943.822 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C13–C18 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H4⋯O20.89 (1)1.95 (2)2.685 (2)138 (2)
N4—H4⋯N30.89 (1)2.34 (2)2.715 (3)105 (2)
N6—H6⋯O1i 0.88 (1)1.95 (2)2.783 (2)157 (3)
C14—H14⋯O2ii 0.932.333.244 (3)168
C9—H9CCg1iii 0.962.943.822 (2)154

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and anti-HSV-1 activity of new 1,2,3-triazole derivatives.

Authors:  Alessandro K Jordão; Vitor F Ferreira; Thiago M L Souza; Gabrielle G de Souza Faria; Viviane Machado; Juliana L Abrantes; Maria C B V de Souza; Anna C Cunha
Journal:  Bioorg Med Chem       Date:  2011-03-02       Impact factor: 3.641

3.  Design and synthesis of new 4-pyrazolin-3-yl-1,2,3-triazoles and 1,2,3-triazol-4-yl-pyrazolin-1-ylthiazoles as potential antimicrobial agents.

Authors:  Bakr F Abdel-Wahab; Ehab Abdel-Latif; Hanan A Mohamed; Ghada E A Awad
Journal:  Eur J Med Chem       Date:  2012-03-23       Impact factor: 6.514

  3 in total

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