Literature DB >> 23634109

Piperazine-1,4-diium bis-(2,4,5-tricarb-oxy-benzoate) dihydrate.

Nagaraju Narayanam1, Kranthi Kumar Gangu, Balakrishna Kurra, Saratchandra Babu Mukkamala.   

Abstract

In the title hydrated salt, C4H12N2 (2+)·2C10H5O8 (-)·2H2O, the piperazinediium cation, lying about an inversion center, adopts a chair conformation. The benzene ring of the anion makes dihedral angles of 25.17 (8)° with the carboxyl-ate group and angles of 8.50 (7), 20.07 (7) and 80.86 (8)° with the three carb-oxy-lic acid groups. In the crystal, the cations, anions and water mol-ecules are connected by O-H⋯O and N-H⋯O hydrogen bonds into double layers parallel to (110).

Entities:  

Year:  2013        PMID: 23634109      PMCID: PMC3629622          DOI: 10.1107/S160053681300723X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For supra­molecular architectures involving benzene-1,2,4,5-tetra­carb­oxy­lic acid and its anions, see: Aghabozorg et al. (2006 ▶, 2008 ▶); Chiwei et al. (2005 ▶); Pasban et al. (2012 ▶); Pasdar et al. (2010 ▶); Smith et al. (2008 ▶); Smith & Wermuth (2010 ▶); Vaidhyanathan et al. (2002 ▶). For proton-transfer systems, see: Aghabozorg et al. (2010 ▶). For inter­molecular inter­actions, see: Janiak (2000 ▶).

Experimental

Crystal data

C4H12N2 2+·2C10H5O8 −·2H2O M = 630.46 Triclinic, a = 8.2521 (2) Å b = 8.4810 (2) Å c = 9.6369 (2) Å α = 87.117 (5)° β = 89.527 (5)° γ = 70.962 (4)° V = 636.73 (3) Å3 Z = 1 Mo Kα radiation μ = 0.14 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.945, T max = 0.985 11108 measured reflections 2234 independent reflections 2061 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.085 S = 1.06 2234 reflections 224 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and DIAMOND (Brandenburg, 2007 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681300723X/yk2086sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681300723X/yk2086Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681300723X/yk2086Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H12N22+·2C10H5O8·2H2OZ = 1
Mr = 630.46F(000) = 328
Triclinic, P1Dx = 1.644 Mg m3
Hall symbol: -P 1Melting point: 560 K
a = 8.2521 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.4810 (2) ÅCell parameters from 7490 reflections
c = 9.6369 (2) Åθ = 2.5–33.0°
α = 87.117 (5)°µ = 0.14 mm1
β = 89.527 (5)°T = 293 K
γ = 70.962 (4)°Block, colourless
V = 636.73 (3) Å30.30 × 0.20 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer2234 independent reflections
Radiation source: fine-focus sealed tube2061 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
ω and φ scanθmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −9→9
Tmin = 0.945, Tmax = 0.985k = −9→10
11108 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.085w = 1/[σ2(Fo2) + (0.0431P)2 + 0.2345P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2234 reflectionsΔρmax = 0.21 e Å3
224 parametersΔρmin = −0.20 e Å3
4 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.075 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.06597 (16)0.70913 (15)0.05612 (13)0.0202 (3)
C20.08629 (16)0.66166 (16)−0.08067 (13)0.0219 (3)
H20.00980.7264−0.14800.026*
C30.21641 (16)0.52142 (16)−0.12023 (13)0.0196 (3)
C40.32899 (16)0.42177 (15)−0.01920 (13)0.0198 (3)
C50.30804 (16)0.46709 (16)0.11737 (13)0.0212 (3)
H50.38240.39950.18460.025*
C60.18074 (16)0.60918 (16)0.15847 (13)0.0200 (3)
C70.22375 (16)0.47981 (16)−0.27035 (13)0.0217 (3)
C80.47247 (16)0.27185 (16)−0.05880 (13)0.0217 (3)
C90.18506 (17)0.63946 (17)0.31156 (14)0.0241 (3)
C10−0.08355 (17)0.86608 (16)0.07812 (14)0.0244 (3)
C110.5751 (2)0.1289 (2)0.4758 (2)0.0448 (4)
H11A0.67500.16210.45550.054*
H11B0.47710.22930.48360.054*
C120.5451 (2)0.0307 (2)0.36090 (17)0.0436 (4)
N10.60207 (17)0.02802 (17)0.60844 (14)0.0371 (3)
O1−0.08934 (13)0.95103 (12)0.18574 (11)0.0337 (3)
H1−0.00390.90620.23420.051*
O2−0.19676 (13)0.91343 (13)−0.01098 (11)0.0368 (3)
O30.29608 (14)0.56784 (13)−0.34862 (10)0.0327 (3)
H30.29740.5411−0.42930.049*
O40.16086 (14)0.38163 (14)−0.31255 (10)0.0348 (3)
O50.50699 (13)0.24168 (13)−0.17891 (10)0.0337 (3)
O60.55721 (13)0.18159 (13)0.04674 (10)0.0373 (3)
H60.63410.10140.01870.056*
O70.25414 (14)0.51726 (13)0.39115 (10)0.0359 (3)
O80.12443 (14)0.78708 (13)0.35313 (10)0.0339 (3)
O90.10687 (16)0.23958 (16)0.41278 (14)0.0453 (3)
H12B0.646 (3)−0.068 (3)0.352 (2)0.051 (5)*
H12A0.518 (3)0.099 (3)0.276 (2)0.061 (6)*
H1A0.700 (2)−0.060 (2)0.605 (2)0.046 (5)*
H1B0.615 (3)0.092 (3)0.677 (2)0.064 (6)*
H9A0.043 (3)0.224 (4)0.479 (2)0.097 (10)*
H9B0.135 (4)0.323 (3)0.421 (3)0.106 (11)*
U11U22U33U12U13U23
C10.0199 (6)0.0181 (6)0.0217 (7)−0.0048 (5)0.0028 (5)−0.0015 (5)
C20.0211 (6)0.0216 (6)0.0193 (6)−0.0023 (5)−0.0020 (5)0.0016 (5)
C30.0203 (6)0.0203 (6)0.0177 (6)−0.0061 (5)0.0017 (5)−0.0012 (5)
C40.0192 (6)0.0200 (6)0.0188 (6)−0.0042 (5)0.0012 (5)−0.0016 (5)
C50.0216 (6)0.0216 (6)0.0172 (6)−0.0029 (5)−0.0011 (5)0.0006 (5)
C60.0209 (6)0.0211 (6)0.0175 (6)−0.0062 (5)0.0021 (5)−0.0021 (5)
C70.0194 (6)0.0222 (7)0.0192 (6)−0.0010 (5)−0.0010 (5)−0.0009 (5)
C80.0211 (6)0.0216 (7)0.0204 (7)−0.0039 (5)−0.0003 (5)−0.0029 (5)
C90.0229 (7)0.0286 (7)0.0200 (7)−0.0067 (5)0.0033 (5)−0.0047 (5)
C100.0233 (7)0.0205 (7)0.0262 (7)−0.0030 (5)0.0047 (6)−0.0002 (5)
C110.0417 (9)0.0311 (8)0.0642 (12)−0.0163 (7)−0.0010 (8)0.0049 (8)
C120.0459 (10)0.0509 (10)0.0267 (8)−0.0069 (8)0.0089 (7)0.0058 (7)
N10.0346 (7)0.0356 (7)0.0356 (7)−0.0016 (6)−0.0049 (6)−0.0169 (6)
O10.0353 (6)0.0245 (5)0.0334 (6)0.0025 (4)0.0003 (4)−0.0098 (4)
O20.0298 (6)0.0326 (6)0.0350 (6)0.0084 (4)−0.0040 (5)−0.0059 (5)
O30.0481 (6)0.0378 (6)0.0168 (5)−0.0202 (5)0.0040 (4)−0.0023 (4)
O40.0428 (6)0.0422 (6)0.0262 (5)−0.0221 (5)0.0022 (4)−0.0100 (4)
O50.0354 (6)0.0339 (6)0.0210 (5)0.0042 (4)0.0023 (4)−0.0086 (4)
O60.0347 (6)0.0350 (6)0.0230 (5)0.0147 (4)−0.0001 (4)−0.0012 (4)
O70.0478 (7)0.0342 (6)0.0168 (5)−0.0008 (5)−0.0016 (4)−0.0016 (4)
O80.0418 (6)0.0303 (6)0.0258 (5)−0.0049 (5)−0.0001 (4)−0.0127 (4)
O90.0401 (7)0.0411 (7)0.0463 (8)−0.0006 (6)−0.0027 (6)−0.0112 (6)
C1—C21.3906 (18)C10—O21.2269 (17)
C1—C61.4127 (18)C10—O11.2841 (17)
C1—C101.5138 (17)C11—N11.479 (2)
C2—C31.3851 (18)C11—C121.487 (3)
C2—H20.9300C11—H11A0.9700
C3—C41.3947 (18)C11—H11B0.9700
C3—C71.5024 (17)C12—N1i1.478 (2)
C4—C51.3833 (18)C12—H12B0.98 (2)
C4—C81.4911 (17)C12—H12A0.96 (2)
C5—C61.3885 (18)N1—C12i1.478 (2)
C5—H50.9300N1—H1A0.904 (15)
C6—C91.5129 (18)N1—H1B0.901 (16)
C7—O41.2031 (17)O1—H10.8200
C7—O31.3074 (16)O3—H30.8200
C8—O51.2096 (16)O6—H60.8200
C8—O61.3014 (16)O9—H9A0.858 (17)
C9—O71.2367 (17)O9—H9B0.824 (18)
C9—O81.2715 (17)
C2—C1—C6118.71 (11)O8—C9—C6119.92 (12)
C2—C1—C10114.30 (11)O2—C10—O1120.53 (12)
C6—C1—C10126.99 (12)O2—C10—C1118.69 (12)
C3—C2—C1122.32 (12)O1—C10—C1120.74 (12)
C3—C2—H2118.8N1—C11—C12110.21 (13)
C1—C2—H2118.8N1—C11—H11A109.6
C2—C3—C4119.08 (12)C12—C11—H11A109.6
C2—C3—C7117.76 (11)N1—C11—H11B109.6
C4—C3—C7123.09 (11)C12—C11—H11B109.6
C5—C4—C3118.88 (11)H11A—C11—H11B108.1
C5—C4—C8120.72 (11)N1i—C12—C11110.90 (13)
C3—C4—C8120.38 (11)N1i—C12—H12B107.1 (11)
C4—C5—C6122.85 (12)C11—C12—H12B109.1 (12)
C4—C5—H5118.6N1i—C12—H12A106.8 (12)
C6—C5—H5118.6C11—C12—H12A110.4 (13)
C5—C6—C1118.16 (11)H12B—C12—H12A112.5 (17)
C5—C6—C9114.29 (11)C12i—N1—C11110.89 (13)
C1—C6—C9127.54 (11)C12i—N1—H1A110.4 (12)
O4—C7—O3124.71 (12)C11—N1—H1A110.1 (12)
O4—C7—C3122.38 (12)C12i—N1—H1B109.9 (14)
O3—C7—C3112.81 (11)C11—N1—H1B108.3 (14)
O5—C8—O6124.18 (12)H1A—N1—H1B107.1 (19)
O5—C8—C4121.94 (12)C10—O1—H1109.5
O6—C8—C4113.86 (11)C7—O3—H3109.5
O7—C9—O8122.61 (12)C8—O6—H6109.5
O7—C9—C6117.42 (11)H9A—O9—H9B112 (3)
C6—C1—C2—C3−0.96 (19)C4—C3—C7—O481.46 (17)
C10—C1—C2—C3179.89 (12)C2—C3—C7—O380.87 (15)
C1—C2—C3—C41.5 (2)C4—C3—C7—O3−102.12 (14)
C1—C2—C3—C7178.63 (12)C5—C4—C8—O5−170.29 (13)
C2—C3—C4—C5−0.59 (19)C3—C4—C8—O57.9 (2)
C7—C3—C4—C5−177.56 (12)C5—C4—C8—O68.07 (18)
C2—C3—C4—C8−178.79 (11)C3—C4—C8—O6−173.75 (12)
C7—C3—C4—C84.23 (19)C5—C6—C9—O7−24.00 (18)
C3—C4—C5—C6−0.9 (2)C1—C6—C9—O7157.18 (13)
C8—C4—C5—C6177.35 (12)C5—C6—C9—O8153.59 (13)
C4—C5—C6—C11.4 (2)C1—C6—C9—O8−25.2 (2)
C4—C5—C6—C9−177.56 (12)C2—C1—C10—O218.28 (18)
C2—C1—C6—C5−0.46 (18)C6—C1—C10—O2−160.79 (13)
C10—C1—C6—C5178.57 (12)C2—C1—C10—O1−159.58 (12)
C2—C1—C6—C9178.31 (12)C6—C1—C10—O121.4 (2)
C10—C1—C6—C9−2.7 (2)N1—C11—C12—N1i56.82 (19)
C2—C3—C7—O4−95.55 (16)C12—C11—N1—C12i−56.81 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1···O80.821.632.4225 (15)161
O3—H3···O7ii0.821.802.6100 (13)167
O6—H6···O2iii0.821.782.5884 (13)170
N1—H1A···O9i0.90 (2)1.83 (2)2.7283 (17)176 (2)
N1—H1B···O5iv0.90 (2)1.94 (2)2.7420 (16)147 (2)
O9—H9A···O8v0.86 (2)2.14 (2)2.9904 (18)174 (3)
O9—H9B···O70.82 (2)2.18 (2)2.9799 (19)163 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O80.821.632.4225 (15)161
O3—H3⋯O7i 0.821.802.6100 (13)167
O6—H6⋯O2ii 0.821.782.5884 (13)170
N1—H1A⋯O9iii 0.90 (2)1.83 (2)2.7283 (17)176 (2)
N1—H1B⋯O5iv 0.90 (2)1.94 (2)2.7420 (16)147 (2)
O9—H9A⋯O8v 0.86 (2)2.14 (2)2.9904 (18)174 (3)
O9—H9B⋯O70.82 (2)2.18 (2)2.9799 (19)163 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Anhydrous 1:1 proton-transfer compounds of isonipecotamide with picric acid and 3,5-dinitrosalicylic acid: 4-carbamoylpiperidinium 2,4,6-trinitrophenolate and two polymorphs of 4-carbamoylpiperidinium 2-carboxy-4,6-dinitrophenolate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr C       Date:  2010-11-19       Impact factor: 1.172

3.  Bis(piperazinediium) benzene-1,2,4,5-tetra-carboxyl-ate hexa-hydrate.

Authors:  Hossein Aghabozorg; Faranak Manteghi; Mohammad Ghadermazi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-29

4.  The 1:1 proton-transfer compounds of 4-(phenyldiazenyl)aniline (aniline yellow) with 3-nitrophthalic, 4-nitrophthalic and 5-nitroisophthalic acids.

Authors:  Graham Smith; Urs D Wermuth; David J Young; Jonathan M White
Journal:  Acta Crystallogr C       Date:  2008-02-09       Impact factor: 1.172

5.  Bis(propane-1,2-diammonium) benzene-1,2,4,5-tetra-carboxyl-ate dihydrate.

Authors:  Hoda Pasdar; Maryam Majdolashrafi; Hossein Aghabozorg; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-06
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.