Literature DB >> 23634061

2-(4-Fluoro-benzyl-idene)propane-dinitrile: monoclinic polymorph.

Ahmed M El-Agrody1, Mohamed A Al-Omar, Abd El-Galil E Amr, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The title compound, C10H5FN2, is a monoclinic (P21/c) polymorph of the previously reported triclinic (P-1) form [Anti-pin et al. (2003 ▶). J. Mol. Struct. 650, 1-20]. The 13 non-H atoms in the title polymorph are almost coplanar (r.m.s. deviation = 0.020 Å); a small twist between the fluoro-benzene and dinitrile groups [C-C-C-C torsion angle = 175.49 (16)°] is evident in the triclinic polymorph. In the crystal, C-H⋯N inter-actions lead to supra-molecular layers parallel to (-101); these are connected by C-F⋯π inter-actions.

Entities:  

Year:  2013        PMID: 23634061      PMCID: PMC3629574          DOI: 10.1107/S1600536813006235

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry and biological activity of 4H-pyran derivatives, see: El-Agrody et al. (2011 ▶); Sabry et al. (2011 ▶). For the structure of the triclinic polymorph, see: Anti­pin et al. (2003 ▶); Ng & Tiekink (2013 ▶).

Experimental

Crystal data

C10H5FN2 M = 172.16 Monoclinic, a = 9.1491 (9) Å b = 12.7961 (14) Å c = 7.5828 (11) Å β = 106.317 (13)° V = 851.98 (18) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 295 K 0.35 × 0.15 × 0.05 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.892, T max = 1.000 7732 measured reflections 1957 independent reflections 1149 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.190 S = 1.09 1957 reflections 118 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶), QMol (Gans & Shalloway, 2001 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813006235/hb7051sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813006235/hb7051Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813006235/hb7051Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H5FN2F(000) = 352
Mr = 172.16Dx = 1.342 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1835 reflections
a = 9.1491 (9) Åθ = 3.1–27.5°
b = 12.7961 (14) ŵ = 0.10 mm1
c = 7.5828 (11) ÅT = 295 K
β = 106.317 (13)°Prism, yellow
V = 851.98 (18) Å30.35 × 0.15 × 0.05 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector1957 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1149 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.045
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 3.2°
ω scanh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −16→14
Tmin = 0.892, Tmax = 1.000l = −9→9
7732 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.190H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0742P)2 + 0.0917P] where P = (Fo2 + 2Fc2)/3
1957 reflections(Δ/σ)max < 0.001
118 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.35050 (15)0.22275 (14)0.1895 (2)0.0959 (6)
N11.2165 (3)0.47627 (19)0.9490 (4)0.1097 (9)
N21.0706 (2)0.15887 (19)0.8205 (3)0.0900 (8)
C10.7452 (2)0.34429 (17)0.5304 (3)0.0566 (6)
C20.6299 (3)0.4089 (2)0.4263 (3)0.0704 (7)
H20.64340.48090.43400.084*
C30.4968 (3)0.3689 (2)0.3126 (3)0.0775 (7)
H30.42090.41290.24420.093*
C40.4797 (2)0.2624 (2)0.3035 (3)0.0685 (7)
C50.5886 (2)0.1964 (2)0.4027 (3)0.0651 (6)
H50.57330.12450.39370.078*
C60.7208 (2)0.23631 (18)0.5158 (3)0.0606 (6)
H60.79520.19110.58360.073*
C70.8788 (2)0.39364 (18)0.6487 (3)0.0627 (6)
H70.87630.46630.64510.075*
C81.0061 (2)0.35367 (18)0.7630 (3)0.0611 (6)
C91.1232 (3)0.4227 (2)0.8665 (3)0.0773 (7)
C101.0398 (2)0.2445 (2)0.7927 (3)0.0648 (6)
U11U22U33U12U13U23
F10.0668 (9)0.1132 (15)0.0951 (11)−0.0038 (8)0.0019 (8)−0.0117 (9)
N10.1033 (16)0.0584 (16)0.131 (2)−0.0124 (13)−0.0271 (14)0.0014 (13)
N20.0849 (14)0.0549 (15)0.1148 (19)0.0018 (11)0.0028 (12)0.0019 (12)
C10.0644 (12)0.0469 (14)0.0582 (12)0.0029 (9)0.0169 (9)0.0002 (9)
C20.0809 (15)0.0528 (15)0.0747 (14)0.0089 (11)0.0174 (12)0.0037 (11)
C30.0714 (14)0.080 (2)0.0734 (15)0.0198 (13)0.0088 (11)0.0048 (13)
C40.0595 (13)0.080 (2)0.0642 (14)−0.0006 (11)0.0139 (10)−0.0066 (11)
C50.0686 (13)0.0576 (15)0.0684 (13)−0.0032 (11)0.0179 (11)−0.0039 (10)
C60.0639 (12)0.0516 (14)0.0632 (12)0.0033 (10)0.0125 (10)0.0013 (9)
C70.0760 (14)0.0398 (13)0.0702 (13)0.0018 (10)0.0174 (11)0.0001 (9)
C80.0681 (12)0.0434 (14)0.0686 (13)−0.0041 (10)0.0141 (10)−0.0015 (9)
C90.0803 (15)0.0485 (16)0.0899 (17)−0.0003 (12)0.0024 (13)0.0028 (12)
C100.0638 (13)0.0487 (15)0.0766 (14)−0.0028 (11)0.0113 (10)−0.0037 (11)
F1—C41.352 (3)C3—H30.9300
N1—C91.135 (3)C4—C51.361 (3)
N2—C101.136 (3)C5—C61.370 (3)
C1—C61.399 (3)C5—H50.9300
C1—C21.396 (3)C6—H60.9300
C1—C71.443 (3)C7—C81.342 (3)
C2—C31.378 (3)C7—H70.9300
C2—H20.9300C8—C101.435 (3)
C3—C41.372 (3)C8—C91.440 (3)
C6—C1—C2117.5 (2)C4—C5—H5120.2
C6—C1—C7124.74 (19)C6—C5—H5120.2
C2—C1—C7117.8 (2)C5—C6—C1120.7 (2)
C3—C2—C1121.9 (3)C5—C6—H6119.6
C3—C2—H2119.0C1—C6—H6119.6
C1—C2—H2119.0C8—C7—C1131.6 (2)
C4—C3—C2118.0 (2)C8—C7—H7114.2
C4—C3—H3121.0C1—C7—H7114.2
C2—C3—H3121.0C7—C8—C10125.6 (2)
F1—C4—C5119.5 (3)C7—C8—C9119.7 (2)
F1—C4—C3118.2 (2)C10—C8—C9114.7 (2)
C5—C4—C3122.3 (2)N1—C9—C8179.3 (3)
C4—C5—C6119.7 (2)N2—C10—C8177.8 (2)
C6—C1—C2—C3−0.2 (3)C4—C5—C6—C10.0 (3)
C7—C1—C2—C3−178.55 (19)C2—C1—C6—C50.2 (3)
C1—C2—C3—C4−0.1 (4)C7—C1—C6—C5178.50 (19)
C2—C3—C4—F1−178.78 (19)C6—C1—C7—C81.7 (4)
C2—C3—C4—C50.3 (4)C2—C1—C7—C8−180.0 (2)
F1—C4—C5—C6178.84 (19)C1—C7—C8—C100.8 (4)
C3—C4—C5—C6−0.2 (4)C1—C7—C8—C9−179.9 (2)
D—H···AD—HH···AD···AD—H···A
C3—H3···N1i0.932.613.478 (4)155
C7—H7···N2ii0.932.513.424 (3)167
C4—F1···Cg1iii1.35 (1)3.59 (1)3.573 (2)79 (1)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3⋯N1i 0.932.613.478 (4)155
C7—H7⋯N2ii 0.932.513.424 (3)167
C4—F1⋯Cg1iii 1.35 (1)3.59 (1)3.573 (2)79 (1)

Symmetry codes: (i) ; (ii) ; (iii) .

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