Literature DB >> 23634051

7-Hy-droxy-methyl-2-pivaloyl-amino-1,8-naphthyridine.

Hoong-Kun Fun1, Ching Kheng Quah, Krishnendu Aich, Sangita Das, Shyamaprosad Goswami.   

Abstract

In the title compound, C14H17N3O2, the mean plane of the 1,8-naphthyridine ring system (r.m.s deviation = 0.020 Å) forms a dihedral angle of 23.4 (1)° with the acetamide moiety (r.m.s deviation = 0.001 Å). The mol-ecular structure is stabilized by an intra-molecular O-H⋯N hydrogen bond, which generates an S(5) ring motif. In the crystal, mol-ecules are linked into inversion dimers by pairs of N-H⋯O hydrogen bonds, generating 18-membered R 2 (2)(18) ring motifs.

Entities:  

Year:  2013        PMID: 23634051      PMCID: PMC3629533          DOI: 10.1107/S1600536813005527

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the medicinal properties of 1,8-naphthyridine derivatives see: Badawneh et al. (2001 ▶); Litvinov (2004 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C14H17N3O2 M = 259.31 Monoclinic, a = 14.7026 (3) Å b = 6.2586 (1) Å c = 14.7035 (3) Å β = 97.447 (2)° V = 1341.57 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 297 K 0.51 × 0.46 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.956, T max = 0.993 20410 measured reflections 3949 independent reflections 2551 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.074 wR(F 2) = 0.148 S = 1.14 3949 reflections 183 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813005527/rz5047sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813005527/rz5047Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813005527/rz5047Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H17N3O2F(000) = 552
Mr = 259.31Dx = 1.284 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4518 reflections
a = 14.7026 (3) Åθ = 2.8–30.1°
b = 6.2586 (1) ŵ = 0.09 mm1
c = 14.7035 (3) ÅT = 297 K
β = 97.447 (2)°Plate, brown
V = 1341.57 (4) Å30.51 × 0.46 × 0.08 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3949 independent reflections
Radiation source: fine-focus sealed tube2551 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
φ and ω scansθmax = 30.2°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −20→20
Tmin = 0.956, Tmax = 0.993k = −8→8
20410 measured reflectionsl = −20→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.074Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.148H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.0366P)2 + 0.506P] where P = (Fo2 + 2Fc2)/3
3949 reflections(Δ/σ)max = 0.001
183 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.70708 (11)−0.0049 (3)0.72243 (11)0.0731 (5)
O21.20193 (11)0.4754 (2)0.50680 (10)0.0564 (4)
N10.93270 (10)0.1958 (2)0.60449 (9)0.0398 (4)
N21.08422 (10)0.2310 (2)0.58087 (9)0.0403 (4)
C11.01722 (12)0.1059 (3)0.60905 (10)0.0369 (4)
C21.16763 (13)0.1520 (3)0.58648 (11)0.0424 (4)
C31.19173 (15)−0.0552 (3)0.61930 (12)0.0509 (5)
H3A1.2519−0.10320.62260.061*
C41.12550 (14)−0.1827 (3)0.64593 (12)0.0495 (5)
H4A1.1396−0.32060.66680.059*
C51.03554 (13)−0.1052 (3)0.64177 (11)0.0410 (4)
C60.96182 (14)−0.2230 (3)0.66823 (11)0.0468 (5)
H6A0.9707−0.36390.68760.056*
C70.87830 (14)−0.1325 (3)0.66566 (12)0.0475 (5)
H7A0.8296−0.20730.68500.057*
C80.86672 (13)0.0803 (3)0.63253 (11)0.0406 (4)
N30.78116 (12)0.1817 (3)0.62256 (12)0.0490 (4)
C90.70570 (14)0.1334 (3)0.66391 (14)0.0505 (5)
C100.61984 (14)0.2648 (3)0.63154 (15)0.0578 (6)
C110.59481 (17)0.2364 (5)0.52733 (18)0.0814 (8)
H11A0.58920.08690.51300.122*
H11B0.64200.29790.49620.122*
H11C0.53760.30660.50770.122*
C120.54109 (18)0.1846 (5)0.6811 (2)0.0986 (10)
H12A0.52860.03760.66560.148*
H12B0.48720.26870.66270.148*
H12C0.55800.19730.74620.148*
C130.63721 (16)0.5019 (4)0.65370 (17)0.0688 (6)
H13A0.65400.51900.71860.103*
H13B0.58240.58220.63440.103*
H13C0.68600.55300.62200.103*
C141.23927 (14)0.2947 (3)0.55470 (14)0.0536 (5)
H14A1.28100.34120.60750.064*
H14B1.27450.21360.51520.064*
H1N30.7793 (14)0.288 (4)0.5889 (14)0.057 (6)*
H1O21.1439 (18)0.474 (4)0.5097 (18)0.087 (9)*
U11U22U33U12U13U23
O10.0823 (11)0.0626 (10)0.0797 (11)−0.0054 (9)0.0311 (9)0.0198 (9)
O20.0555 (9)0.0436 (8)0.0725 (10)0.0026 (7)0.0170 (8)0.0102 (7)
N10.0502 (9)0.0312 (8)0.0379 (7)0.0001 (7)0.0052 (6)0.0041 (6)
N20.0505 (9)0.0323 (8)0.0381 (7)0.0023 (7)0.0061 (6)0.0028 (6)
C10.0543 (11)0.0285 (9)0.0277 (8)0.0023 (8)0.0041 (7)−0.0003 (7)
C20.0531 (11)0.0408 (10)0.0333 (8)0.0059 (9)0.0058 (8)−0.0014 (7)
C30.0610 (13)0.0464 (12)0.0453 (10)0.0178 (10)0.0074 (9)0.0020 (9)
C40.0760 (14)0.0356 (10)0.0373 (9)0.0169 (10)0.0082 (9)0.0056 (8)
C50.0648 (12)0.0305 (9)0.0276 (8)0.0050 (8)0.0060 (8)−0.0004 (7)
C60.0770 (14)0.0275 (9)0.0354 (9)0.0005 (9)0.0058 (9)0.0041 (7)
C70.0673 (13)0.0343 (10)0.0415 (10)−0.0090 (9)0.0087 (9)0.0036 (8)
C80.0524 (11)0.0351 (9)0.0339 (8)−0.0032 (8)0.0035 (8)−0.0002 (7)
N30.0524 (10)0.0409 (9)0.0547 (10)−0.0029 (8)0.0105 (8)0.0112 (8)
C90.0579 (12)0.0413 (11)0.0538 (11)−0.0123 (9)0.0132 (9)−0.0048 (9)
C100.0519 (12)0.0484 (12)0.0749 (14)−0.0070 (10)0.0151 (11)−0.0055 (11)
C110.0617 (15)0.0837 (19)0.0930 (18)0.0035 (13)−0.0122 (13)−0.0208 (15)
C120.0694 (17)0.084 (2)0.152 (3)−0.0073 (15)0.0491 (18)0.009 (2)
C130.0699 (15)0.0540 (14)0.0838 (16)−0.0001 (12)0.0141 (12)−0.0100 (12)
C140.0532 (12)0.0512 (12)0.0571 (12)0.0051 (10)0.0094 (9)0.0030 (10)
O1—C91.219 (2)C8—N31.399 (2)
O2—C141.406 (2)N3—C91.366 (2)
O2—H1O20.86 (3)N3—H1N30.83 (2)
N1—C81.318 (2)C9—C101.530 (3)
N1—C11.358 (2)C10—C121.531 (3)
N2—C21.315 (2)C10—C131.534 (3)
N2—C11.364 (2)C10—C111.539 (3)
C1—C51.420 (2)C11—H11A0.9600
C2—C31.412 (3)C11—H11B0.9600
C2—C141.501 (3)C11—H11C0.9600
C3—C41.356 (3)C12—H12A0.9600
C3—H3A0.9300C12—H12B0.9600
C4—C51.403 (3)C12—H12C0.9600
C4—H4A0.9300C13—H13A0.9600
C5—C61.407 (3)C13—H13B0.9600
C6—C71.348 (3)C13—H13C0.9600
C6—H6A0.9300C14—H14A0.9700
C7—C81.421 (3)C14—H14B0.9700
C7—H7A0.9300
C14—O2—H1O2106.9 (18)N3—C9—C10115.32 (18)
C8—N1—C1117.60 (15)C9—C10—C12108.7 (2)
C2—N2—C1117.98 (15)C9—C10—C13110.25 (18)
N1—C1—N2116.06 (15)C12—C10—C13109.4 (2)
N1—C1—C5122.31 (17)C9—C10—C11109.20 (18)
N2—C1—C5121.63 (16)C12—C10—C11109.8 (2)
N2—C2—C3123.87 (18)C13—C10—C11109.6 (2)
N2—C2—C14116.29 (16)C10—C11—H11A109.5
C3—C2—C14119.83 (17)C10—C11—H11B109.5
C4—C3—C2118.79 (18)H11A—C11—H11B109.5
C4—C3—H3A120.6C10—C11—H11C109.5
C2—C3—H3A120.6H11A—C11—H11C109.5
C3—C4—C5119.48 (17)H11B—C11—H11C109.5
C3—C4—H4A120.3C10—C12—H12A109.5
C5—C4—H4A120.3C10—C12—H12B109.5
C4—C5—C6124.22 (17)H12A—C12—H12B109.5
C4—C5—C1118.24 (17)C10—C12—H12C109.5
C6—C5—C1117.54 (17)H12A—C12—H12C109.5
C7—C6—C5120.21 (17)H12B—C12—H12C109.5
C7—C6—H6A119.9C10—C13—H13A109.5
C5—C6—H6A119.9C10—C13—H13B109.5
C6—C7—C8118.16 (18)H13A—C13—H13B109.5
C6—C7—H7A120.9C10—C13—H13C109.5
C8—C7—H7A120.9H13A—C13—H13C109.5
N1—C8—N3113.99 (16)H13B—C13—H13C109.5
N1—C8—C7124.12 (18)O2—C14—C2112.97 (16)
N3—C8—C7121.81 (18)O2—C14—H14A109.0
C9—N3—C8128.60 (18)C2—C14—H14A109.0
C9—N3—H1N3118.5 (15)O2—C14—H14B109.0
C8—N3—H1N3112.8 (15)C2—C14—H14B109.0
O1—C9—N3122.1 (2)H14A—C14—H14B107.8
O1—C9—C10122.61 (19)
C8—N1—C1—N2−178.99 (14)C5—C6—C7—C82.3 (3)
C8—N1—C1—C50.6 (2)C1—N1—C8—N3−177.86 (14)
C2—N2—C1—N1178.24 (14)C1—N1—C8—C7−1.0 (2)
C2—N2—C1—C5−1.3 (2)C6—C7—C8—N1−0.4 (3)
C1—N2—C2—C30.5 (2)C6—C7—C8—N3176.20 (16)
C1—N2—C2—C14179.94 (15)N1—C8—N3—C9−162.20 (18)
N2—C2—C3—C40.7 (3)C7—C8—N3—C920.9 (3)
C14—C2—C3—C4−178.71 (17)C8—N3—C9—O15.0 (3)
C2—C3—C4—C5−1.1 (3)C8—N3—C9—C10−174.93 (18)
C3—C4—C5—C6−179.53 (17)O1—C9—C10—C12−2.5 (3)
C3—C4—C5—C10.3 (2)N3—C9—C10—C12177.52 (19)
N1—C1—C5—C4−178.57 (15)O1—C9—C10—C13117.4 (2)
N2—C1—C5—C40.9 (2)N3—C9—C10—C13−62.6 (2)
N1—C1—C5—C61.3 (2)O1—C9—C10—C11−122.2 (2)
N2—C1—C5—C6−179.22 (15)N3—C9—C10—C1157.8 (2)
C4—C5—C6—C7177.13 (17)N2—C2—C14—O2−12.0 (2)
C1—C5—C6—C7−2.7 (2)C3—C2—C14—O2167.53 (16)
D—H···AD—HH···AD···AD—H···A
N3—H1N3···O2i0.83 (2)2.09 (2)2.900 (2)168 (2)
O2—H1O2···N20.86 (3)2.10 (3)2.648 (2)121 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H1N3⋯O2i 0.83 (2)2.09 (2)2.900 (2)168 (2)
O2—H1O2⋯N20.86 (3)2.10 (3)2.648 (2)121 (2)

Symmetry code: (i) .

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