Literature DB >> 23634036

N'-[3-Cyano-4-(4-fluoro-phen-yl)-6-meth-oxy-4H-benzo[h]chromen-2-yl]-N,N-dimethyl-methanimidamide.

Al-Anood M Al-Dies1, Mohamed A Al-Omar, Abd El-Galil E Amr, Ahmed M El-Agrody, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C24H20FN3O2, despite the 4H-pyran ring having a flattened half-chair conformation [the methine C atom lies 0.257 (3) Å above the plane of the remaining atoms with an r.m.s. deviation of 0.0295 Å], the 14 non-H atoms of the 4H-benzo[h]chromene residue are approximately coplanar (r.m.s. deviation = 0.081 Å). The benzene ring is nearly perpendicular to this plane [dihedral angle = 76.18 (10)°], but the planar (r.m.s. deviation = 0.033 Å) dimethyl-methanimidamide substituent is coplanar [dihedral angle = 1.96 (12)°]. In the crystal, centrosymmetric dimeric aggregates arise from C-H⋯N inter-actions, and these are connected into supra-molecular layers in the ab plane by C-H⋯π and π-π [inter-centroid (central C6 ring)⋯(outer C6 ring)(i) distance = 3.8564 (14) Å] inter-actions.

Entities:  

Year:  2013        PMID: 23634036      PMCID: PMC3629518          DOI: 10.1107/S1600536813005503

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to synthetic aspects of benzochromene derivatives, see: El-Agrody et al. (2011 ▶); Sabry et al. (2011 ▶). For biological inter­est in these derivatives, see: Kidwai et al. (2010 ▶); Singh et al. (2010 ▶); Vukovic et al. (2010 ▶); Abd-El-Aziz et al. (2007 ▶). For a closely related structure, see: Al-Dies et al. (2012 ▶).

Experimental

Crystal data

C24H20FN3O2 M = 401.43 Triclinic, a = 8.8438 (8) Å b = 11.0887 (12) Å c = 11.8001 (13) Å α = 66.054 (10)° β = 83.684 (8)° γ = 75.946 (9)° V = 1025.85 (18) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.30 × 0.20 × 0.10 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.982, T max = 1.000 9814 measured reflections 4745 independent reflections 2729 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.179 S = 1.04 4745 reflections 273 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813005503/hg5296sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813005503/hg5296Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813005503/hg5296Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H20FN3O2Z = 2
Mr = 401.43F(000) = 420
Triclinic, P1Dx = 1.300 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.8438 (8) ÅCell parameters from 2074 reflections
b = 11.0887 (12) Åθ = 2.9–27.5°
c = 11.8001 (13) ŵ = 0.09 mm1
α = 66.054 (10)°T = 295 K
β = 83.684 (8)°Prism, light-brown
γ = 75.946 (9)°0.30 × 0.20 × 0.10 mm
V = 1025.85 (18) Å3
Agilent SuperNova Dual diffractometer with an Atlas detector4745 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2729 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.034
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.9°
ω scanh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −14→10
Tmin = 0.982, Tmax = 1.000l = −15→15
9814 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.179H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0687P)2 + 0.1794P] where P = (Fo2 + 2Fc2)/3
4745 reflections(Δ/σ)max < 0.001
273 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.10342 (19)0.85738 (18)0.04207 (18)0.1067 (7)
O10.71783 (15)0.23009 (15)0.24647 (13)0.0480 (4)
O20.17217 (17)0.07626 (18)0.46549 (17)0.0682 (5)
N10.91690 (18)0.34311 (18)0.21651 (16)0.0462 (4)
N21.1331 (2)0.2837 (2)0.10802 (18)0.0584 (5)
N30.8000 (2)0.5769 (2)0.3565 (2)0.0720 (6)
C10.5773 (2)0.1989 (2)0.30364 (19)0.0406 (5)
C20.5430 (2)0.0847 (2)0.29533 (19)0.0429 (5)
C30.6411 (3)0.0088 (2)0.2340 (2)0.0520 (6)
H30.73310.03370.19650.062*
C40.6024 (3)−0.1006 (3)0.2292 (2)0.0659 (7)
H40.6684−0.14990.18870.079*
C50.4646 (3)−0.1394 (3)0.2847 (3)0.0698 (7)
H50.4393−0.21420.28060.084*
C60.3676 (3)−0.0688 (3)0.3445 (2)0.0617 (7)
H60.2766−0.09620.38150.074*
C70.4025 (2)0.0459 (2)0.3515 (2)0.0476 (5)
C80.3038 (2)0.1228 (2)0.4135 (2)0.0484 (5)
C90.3424 (2)0.2318 (2)0.4185 (2)0.0463 (5)
H90.27690.28030.45990.056*
C100.4819 (2)0.2725 (2)0.36114 (18)0.0407 (5)
C110.5173 (2)0.3992 (2)0.36151 (18)0.0408 (5)
H110.50200.39620.44610.049*
C120.6864 (2)0.4009 (2)0.32420 (19)0.0418 (5)
C130.7733 (2)0.3255 (2)0.26505 (19)0.0421 (5)
C140.9972 (2)0.2654 (2)0.1639 (2)0.0515 (6)
H140.95820.19410.16540.062*
C151.2168 (3)0.2017 (4)0.0420 (3)0.0856 (9)
H15A1.16580.12960.05590.128*
H15B1.32180.16440.07140.128*
H15C1.21830.2568−0.04520.128*
C161.1981 (3)0.3944 (3)0.1012 (3)0.0690 (7)
H16A1.14160.43340.15690.103*
H16B1.18990.46180.01810.103*
H16C1.30570.36120.12430.103*
C170.7526 (2)0.4977 (2)0.3405 (2)0.0510 (6)
C180.4058 (2)0.5249 (2)0.27590 (19)0.0415 (5)
C190.4420 (3)0.5885 (2)0.1521 (2)0.0554 (6)
H190.53690.55540.12110.066*
C200.3412 (3)0.6998 (3)0.0731 (3)0.0704 (7)
H200.36750.7421−0.01000.084*
C210.2032 (3)0.7458 (3)0.1193 (3)0.0668 (7)
C220.1591 (3)0.6859 (3)0.2398 (3)0.0699 (8)
H220.06210.71860.26840.084*
C230.2623 (2)0.5750 (2)0.3191 (2)0.0582 (6)
H230.23490.53380.40210.070*
C240.0645 (3)0.1533 (3)0.5229 (3)0.0758 (8)
H24A−0.02300.11170.55520.114*
H24B0.02910.24340.46280.114*
H24C0.11470.15660.58930.114*
U11U22U33U12U13U23
F10.0857 (11)0.0803 (13)0.1207 (16)0.0159 (9)−0.0371 (10)−0.0162 (11)
O10.0466 (8)0.0539 (10)0.0540 (9)−0.0222 (7)0.0144 (6)−0.0293 (8)
O20.0510 (9)0.0675 (12)0.0898 (13)−0.0299 (8)0.0205 (8)−0.0305 (10)
N10.0380 (9)0.0529 (11)0.0474 (11)−0.0126 (8)0.0044 (7)−0.0191 (9)
N20.0426 (10)0.0811 (15)0.0584 (13)−0.0176 (10)0.0095 (8)−0.0347 (11)
N30.0654 (13)0.0720 (16)0.0951 (18)−0.0265 (12)0.0034 (11)−0.0440 (14)
C10.0399 (10)0.0404 (12)0.0400 (11)−0.0130 (9)0.0035 (8)−0.0129 (9)
C20.0453 (11)0.0383 (12)0.0425 (12)−0.0096 (9)−0.0024 (9)−0.0127 (9)
C30.0568 (13)0.0457 (13)0.0532 (14)−0.0128 (10)0.0043 (10)−0.0195 (11)
C40.0809 (17)0.0533 (16)0.0714 (18)−0.0162 (13)0.0074 (13)−0.0337 (14)
C50.0837 (18)0.0531 (16)0.088 (2)−0.0263 (14)0.0006 (15)−0.0366 (15)
C60.0595 (14)0.0521 (15)0.0765 (18)−0.0246 (12)−0.0003 (12)−0.0214 (13)
C70.0485 (11)0.0408 (12)0.0518 (13)−0.0144 (9)−0.0039 (9)−0.0131 (10)
C80.0395 (11)0.0485 (13)0.0529 (14)−0.0165 (10)0.0048 (9)−0.0129 (11)
C90.0431 (11)0.0435 (12)0.0502 (13)−0.0122 (9)0.0076 (9)−0.0170 (10)
C100.0413 (10)0.0396 (12)0.0387 (11)−0.0126 (9)0.0038 (8)−0.0118 (9)
C110.0445 (10)0.0427 (12)0.0382 (11)−0.0139 (9)0.0063 (8)−0.0181 (10)
C120.0420 (10)0.0402 (12)0.0466 (12)−0.0128 (9)0.0008 (9)−0.0187 (10)
C130.0406 (10)0.0442 (12)0.0412 (12)−0.0156 (9)−0.0003 (8)−0.0130 (10)
C140.0428 (11)0.0607 (15)0.0544 (14)−0.0161 (10)0.0038 (10)−0.0246 (12)
C150.0602 (15)0.122 (3)0.096 (2)−0.0189 (16)0.0195 (14)−0.071 (2)
C160.0544 (14)0.083 (2)0.0708 (18)−0.0321 (13)0.0091 (12)−0.0245 (15)
C170.0471 (12)0.0516 (14)0.0571 (14)−0.0153 (10)0.0027 (10)−0.0225 (12)
C180.0415 (10)0.0388 (11)0.0484 (13)−0.0139 (9)0.0070 (9)−0.0204 (10)
C190.0500 (12)0.0555 (15)0.0540 (15)−0.0084 (11)0.0060 (10)−0.0182 (12)
C200.0670 (16)0.0658 (18)0.0583 (16)−0.0065 (13)−0.0052 (12)−0.0077 (14)
C210.0595 (15)0.0540 (16)0.0779 (19)−0.0032 (12)−0.0184 (13)−0.0176 (14)
C220.0443 (13)0.0620 (17)0.100 (2)−0.0003 (12)0.0017 (13)−0.0358 (16)
C230.0546 (13)0.0544 (15)0.0657 (16)−0.0128 (11)0.0142 (11)−0.0268 (13)
C240.0433 (13)0.091 (2)0.094 (2)−0.0241 (13)0.0203 (13)−0.0373 (18)
F1—C211.368 (3)C10—C111.514 (3)
O1—C131.368 (2)C11—C121.514 (3)
O1—C11.398 (2)C11—C181.531 (3)
O2—C81.369 (2)C11—H110.9800
O2—C241.424 (3)C12—C131.350 (3)
N1—C141.293 (3)C12—C171.425 (3)
N1—C131.359 (2)C14—H140.9300
N2—C141.325 (3)C15—H15A0.9600
N2—C161.448 (3)C15—H15B0.9600
N2—C151.450 (3)C15—H15C0.9600
N3—C171.146 (3)C16—H16A0.9600
C1—C101.352 (3)C16—H16B0.9600
C1—C21.414 (3)C16—H16C0.9600
C2—C31.409 (3)C18—C191.380 (3)
C2—C71.420 (3)C18—C231.387 (3)
C3—C41.361 (3)C19—C201.379 (3)
C3—H30.9300C19—H190.9300
C4—C51.396 (3)C20—C211.350 (4)
C4—H40.9300C20—H200.9300
C5—C61.355 (3)C21—C221.361 (4)
C5—H50.9300C22—C231.390 (3)
C6—C71.415 (3)C22—H220.9300
C6—H60.9300C23—H230.9300
C7—C81.424 (3)C24—H24A0.9600
C8—C91.358 (3)C24—H24B0.9600
C9—C101.422 (3)C24—H24C0.9600
C9—H90.9300
C13—O1—C1118.87 (16)C17—C12—C11118.11 (18)
C8—O2—C24116.89 (18)C12—C13—N1122.48 (19)
C14—N1—C13119.91 (19)C12—C13—O1121.15 (17)
C14—N2—C16121.1 (2)N1—C13—O1116.32 (18)
C14—N2—C15121.8 (2)N1—C14—N2122.4 (2)
C16—N2—C15116.9 (2)N1—C14—H14118.8
C10—C1—O1122.70 (18)N2—C14—H14118.8
C10—C1—C2122.93 (18)N2—C15—H15A109.5
O1—C1—C2114.36 (18)N2—C15—H15B109.5
C3—C2—C1123.11 (18)H15A—C15—H15B109.5
C3—C2—C7119.0 (2)N2—C15—H15C109.5
C1—C2—C7117.87 (19)H15A—C15—H15C109.5
C4—C3—C2120.6 (2)H15B—C15—H15C109.5
C4—C3—H3119.7N2—C16—H16A109.5
C2—C3—H3119.7N2—C16—H16B109.5
C3—C4—C5120.6 (2)H16A—C16—H16B109.5
C3—C4—H4119.7N2—C16—H16C109.5
C5—C4—H4119.7H16A—C16—H16C109.5
C6—C5—C4120.4 (2)H16B—C16—H16C109.5
C6—C5—H5119.8N3—C17—C12177.0 (2)
C4—C5—H5119.8C19—C18—C23117.9 (2)
C5—C6—C7121.1 (2)C19—C18—C11121.06 (18)
C5—C6—H6119.4C23—C18—C11121.02 (19)
C7—C6—H6119.4C18—C19—C20121.8 (2)
C6—C7—C2118.3 (2)C18—C19—H19119.1
C6—C7—C8122.9 (2)C20—C19—H19119.1
C2—C7—C8118.84 (19)C21—C20—C19118.4 (3)
C9—C8—O2124.9 (2)C21—C20—H20120.8
C9—C8—C7120.82 (18)C19—C20—H20120.8
O2—C8—C7114.24 (19)C20—C21—C22122.8 (2)
C8—C9—C10120.8 (2)C20—C21—F1118.8 (3)
C8—C9—H9119.6C22—C21—F1118.4 (2)
C10—C9—H9119.6C21—C22—C23118.4 (2)
C1—C10—C9118.72 (19)C21—C22—H22120.8
C1—C10—C11121.56 (17)C23—C22—H22120.8
C9—C10—C11119.67 (18)C18—C23—C22120.8 (2)
C10—C11—C12108.81 (16)C18—C23—H23119.6
C10—C11—C18110.34 (16)C22—C23—H23119.6
C12—C11—C18112.23 (16)O2—C24—H24A109.5
C10—C11—H11108.5O2—C24—H24B109.5
C12—C11—H11108.5H24A—C24—H24B109.5
C18—C11—H11108.5O2—C24—H24C109.5
C13—C12—C17117.84 (18)H24A—C24—H24C109.5
C13—C12—C11123.71 (18)H24B—C24—H24C109.5
C13—O1—C1—C1010.3 (3)C9—C10—C11—C12166.21 (18)
C13—O1—C1—C2−170.25 (17)C1—C10—C11—C18107.5 (2)
C10—C1—C2—C3179.1 (2)C9—C10—C11—C18−70.2 (2)
O1—C1—C2—C3−0.4 (3)C10—C11—C12—C1318.4 (3)
C10—C1—C2—C7−0.7 (3)C18—C11—C12—C13−104.0 (2)
O1—C1—C2—C7179.76 (17)C10—C11—C12—C17−168.54 (18)
C1—C2—C3—C4179.8 (2)C18—C11—C12—C1769.1 (2)
C7—C2—C3—C4−0.4 (3)C17—C12—C13—N1−3.0 (3)
C2—C3—C4—C50.2 (4)C11—C12—C13—N1170.10 (18)
C3—C4—C5—C6−0.2 (4)C17—C12—C13—O1179.69 (18)
C4—C5—C6—C70.4 (4)C11—C12—C13—O1−7.2 (3)
C5—C6—C7—C2−0.6 (4)C14—N1—C13—C12178.0 (2)
C5—C6—C7—C8−179.9 (2)C14—N1—C13—O1−4.6 (3)
C3—C2—C7—C60.6 (3)C1—O1—C13—C12−8.2 (3)
C1—C2—C7—C6−179.56 (19)C1—O1—C13—N1174.29 (17)
C3—C2—C7—C8179.9 (2)C13—N1—C14—N2175.5 (2)
C1—C2—C7—C8−0.2 (3)C16—N2—C14—N1−1.0 (4)
C24—O2—C8—C93.7 (3)C15—N2—C14—N1−175.6 (2)
C24—O2—C8—C7−176.6 (2)C10—C11—C18—C19−89.7 (2)
C6—C7—C8—C9179.6 (2)C12—C11—C18—C1931.8 (3)
C2—C7—C8—C90.3 (3)C10—C11—C18—C2387.5 (2)
C6—C7—C8—O2−0.1 (3)C12—C11—C18—C23−151.0 (2)
C2—C7—C8—O2−179.39 (18)C23—C18—C19—C201.1 (4)
O2—C8—C9—C10−179.8 (2)C11—C18—C19—C20178.4 (2)
C7—C8—C9—C100.5 (3)C18—C19—C20—C21−0.6 (4)
O1—C1—C10—C9−178.99 (17)C19—C20—C21—C22−0.8 (4)
C2—C1—C10—C91.6 (3)C19—C20—C21—F1179.0 (2)
O1—C1—C10—C113.3 (3)C20—C21—C22—C231.7 (4)
C2—C1—C10—C11−176.16 (18)F1—C21—C22—C23−178.2 (2)
C8—C9—C10—C1−1.4 (3)C19—C18—C23—C22−0.2 (3)
C8—C9—C10—C11176.33 (19)C11—C18—C23—C22−177.5 (2)
C1—C10—C11—C12−16.1 (3)C21—C22—C23—C18−1.1 (4)
D—H···AD—HH···AD···AD—H···A
C23—H23···N3i0.932.623.542 (3)171
C5—H5···Cg1ii0.932.793.670 (3)159
C15—H15B···Cg2iii0.962.933.732 (3)142
C16—H16C···Cg3iii0.962.913.589 (3)129
Table 1

Hydrogen-bond geometry (Å, °)

Cg1, Cg2 and Cg3 are the centroids of the C18–C23, C2–C7 and C1,C2,C7–C10 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C23—H23⋯N3i 0.932.623.542 (3)171
C5—H5⋯Cg1ii 0.932.793.670 (3)159
C15—H15BCg2iii 0.962.933.732 (3)142
C16—H16CCg3iii 0.962.913.589 (3)129

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  Nermien M Sabry; Hany M Mohamed; Essam Shawky A E H Khattab; Shymaa S Motlaq; Ahmed M El-Agrody
Journal:  Eur J Med Chem       Date:  2010-12-21       Impact factor: 6.514

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