Literature DB >> 23634028

d-Phenyl-glycinium bromide.

Mohanadoss Parthasarathy1, Kannan Arun Kumar, Rengasamy Gopalakrishnan.   

Abstract

In the crystal of the title salt, C8H10NO2 (+)·Br(-), the bromide anions and the phenylglycinium cations are -linked through N-H⋯Br, O-H⋯Br and C-H⋯O hydrogen bonds, generating sheets lying parallel to (001).

Entities:  

Year:  2013        PMID: 23634028      PMCID: PMC3629510          DOI: 10.1107/S1600536813004807

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a similar compound with a different halogen anion, see: Ravichandran et al. (1998 ▶). For related structures and background, see: Srinivasan et al. (2001 ▶); Bouchouit et al. (2004 ▶); Ramaswamy et al. (2001 ▶); Bouacida et al. (2006 ▶); Thomsen et al. (1994 ▶). For biological importance, see: Satyam et al. (1996 ▶); Jayasinghe et al. (1994 ▶); Chun et al. (2010 ▶); Thomas & West (2011 ▶).

Experimental

Crystal data

C8H10NO2Br M = 232.08 Orthorhombic, a = 5.5240 (5) Å b = 7.4735 (5) Å c = 23.1229 (18) Å V = 954.60 (13) Å3 Z = 4 Mo Kα radiation μ = 4.27 mm−1 T = 295 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.317, T max = 0.415 5824 measured reflections 2170 independent reflections 2003 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.022 wR(F 2) = 0.046 S = 1.03 2170 reflections 114 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack (1983 ▶) Flack parameter: 0.011 (8) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813004807/pk2465sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004807/pk2465Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813004807/pk2465Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H10NO2+·BrF(000) = 464
Mr = 232.08Dx = 1.615 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3239 reflections
a = 5.5240 (5) Åθ = 2.6–28.8°
b = 7.4735 (5) ŵ = 4.27 mm1
c = 23.1229 (18) ÅT = 295 K
V = 954.60 (13) Å3Block, colourless
Z = 40.35 × 0.30 × 0.25 mm
Bruker Kappa APEXII CCD diffractometer2170 independent reflections
Radiation source: fine-focus sealed tube2003 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
ω and φ scanθmax = 27.5°, θmin = 3.3°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −6→7
Tmin = 0.317, Tmax = 0.415k = −9→5
5824 measured reflectionsl = −28→30
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.022w = 1/[σ2(Fo2)]
wR(F2) = 0.046(Δ/σ)max = 0.003
S = 1.03Δρmax = 0.25 e Å3
2170 reflectionsΔρmin = −0.29 e Å3
114 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0530 (13)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983)
Secondary atom site location: difference Fourier mapFlack parameter: 0.011 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1060 (5)0.5444 (3)0.56980 (9)0.0370 (5)
H1−0.02510.58840.59060.044*
C20.1209 (5)0.5734 (3)0.51081 (9)0.0418 (6)
H2−0.00060.63720.49210.050*
C30.3119 (5)0.5092 (3)0.47991 (9)0.0424 (6)
H30.31960.52900.44020.051*
C40.4922 (5)0.4160 (3)0.50678 (9)0.0443 (6)
H40.62290.37340.48550.053*
C50.4804 (4)0.3849 (3)0.56595 (9)0.0355 (5)
H50.60240.32040.58420.043*
C60.2866 (4)0.4500 (2)0.59770 (7)0.0264 (4)
C70.2695 (4)0.4057 (2)0.66152 (7)0.0282 (5)
H70.42170.34990.67380.034*
C80.0650 (4)0.2773 (3)0.67328 (8)0.0311 (5)
N10.2266 (4)0.5687 (2)0.69772 (6)0.0345 (4)
H1A0.33690.65140.68920.063 (8)*
H1B0.23790.53990.73500.063 (8)*
H1C0.07940.61170.69050.047 (7)*
O10.1199 (4)0.1163 (2)0.65347 (8)0.0561 (5)
H1D0.00510.04860.65860.084*
O2−0.1206 (3)0.3164 (2)0.69632 (6)0.0441 (4)
Br10.71415 (4)0.82278 (3)0.681529 (8)0.03843 (9)
U11U22U33U12U13U23
C10.0381 (14)0.0388 (11)0.0339 (11)0.0062 (12)0.0048 (10)−0.0032 (10)
C20.0552 (17)0.0342 (12)0.0360 (12)0.0066 (11)−0.0030 (11)0.0072 (10)
C30.0638 (18)0.0364 (12)0.0270 (10)−0.0101 (13)0.0087 (11)0.0010 (9)
C40.0417 (16)0.0496 (14)0.0415 (14)−0.0021 (12)0.0170 (11)−0.0082 (11)
C50.0277 (13)0.0429 (12)0.0360 (12)0.0004 (11)0.0035 (9)−0.0027 (10)
C60.0261 (11)0.0258 (9)0.0273 (9)−0.0062 (10)0.0011 (9)−0.0013 (7)
C70.0261 (13)0.0316 (10)0.0269 (9)−0.0034 (10)0.0012 (8)0.0002 (7)
C80.0352 (14)0.0323 (11)0.0258 (11)−0.0071 (10)−0.0018 (9)0.0014 (8)
N10.0377 (13)0.0396 (9)0.0262 (9)−0.0137 (10)0.0029 (8)−0.0036 (7)
O10.0634 (15)0.0333 (8)0.0715 (12)−0.0161 (9)0.0238 (10)−0.0057 (8)
O20.0328 (9)0.0448 (9)0.0547 (9)−0.0106 (9)0.0085 (7)−0.0021 (8)
Br10.04061 (14)0.03701 (12)0.03766 (12)−0.01269 (10)0.00446 (10)−0.00279 (9)
C1—C61.382 (3)C6—C71.515 (2)
C1—C21.383 (3)C7—N11.497 (2)
C1—H10.9300C7—C81.507 (3)
C2—C31.361 (3)C7—H70.9800
C2—H20.9300C8—O21.192 (3)
C3—C41.365 (3)C8—O11.323 (3)
C3—H30.9300N1—H1A0.8900
C4—C51.389 (3)N1—H1B0.8900
C4—H40.9300N1—H1C0.8900
C5—C61.386 (3)O1—H1D0.8200
C5—H50.9300
C6—C1—C2119.8 (2)C5—C6—C7119.15 (19)
C6—C1—H1120.1N1—C7—C8107.37 (17)
C2—C1—H1120.1N1—C7—C6112.12 (15)
C3—C2—C1120.6 (2)C8—C7—C6111.19 (16)
C3—C2—H2119.7N1—C7—H7108.7
C1—C2—H2119.7C8—C7—H7108.7
C2—C3—C4120.4 (2)C6—C7—H7108.7
C2—C3—H3119.8O2—C8—O1125.1 (2)
C4—C3—H3119.8O2—C8—C7124.73 (19)
C3—C4—C5120.0 (2)O1—C8—C7110.16 (19)
C3—C4—H4120.0C7—N1—H1A109.5
C5—C4—H4120.0C7—N1—H1B109.5
C6—C5—C4119.9 (2)H1A—N1—H1B109.5
C6—C5—H5120.0C7—N1—H1C109.5
C4—C5—H5120.0H1A—N1—H1C109.5
C1—C6—C5119.30 (19)H1B—N1—H1C109.5
C1—C6—C7121.4 (2)C8—O1—H1D109.5
C6—C1—C2—C30.2 (4)C1—C6—C7—N1−54.0 (3)
C1—C2—C3—C4−0.3 (4)C5—C6—C7—N1130.1 (2)
C2—C3—C4—C50.5 (4)C1—C6—C7—C866.2 (2)
C3—C4—C5—C6−0.6 (3)C5—C6—C7—C8−109.7 (2)
C2—C1—C6—C5−0.2 (3)N1—C7—C8—O215.6 (3)
C2—C1—C6—C7−176.2 (2)C6—C7—C8—O2−107.4 (2)
C4—C5—C6—C10.5 (3)N1—C7—C8—O1−165.48 (17)
C4—C5—C6—C7176.5 (2)C6—C7—C8—O171.5 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1B···Br1i0.892.543.3586 (17)154
N1—H1C···Br1ii0.892.573.429 (2)163
N1—H1A···Br10.892.453.3166 (18)164
O1—H1D···Br1iii0.822.393.2027 (17)171
C7—H7···O2iv0.982.593.527 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1B⋯Br1i 0.892.543.3586 (17)154
N1—H1C⋯Br1ii 0.892.573.429 (2)163
N1—H1A⋯Br10.892.453.3166 (18)164
O1—H1D⋯Br1iii 0.822.393.2027 (17)171
C7—H7⋯O2iv 0.982.593.527 (3)159

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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