Literature DB >> 23634013

Poly[μ-aqua-aqua-μ4-naphthalene-1,8-dicarboxyl-ato-barium]: a layer structure.

Dan Zhao1, Fei Fei Li, Peng Liang, Jun-Ran Ren, Shen Qiu.   

Abstract

The title compound, [Ba(C12H6O4)(H2O)2] n , is represented by a layer-like structure built of BaO8 polyhedra. The asymmetric unit contains a Ba(2+) ion, half a coordinating water mol-ecule and half a μ4-bridging naphthalene-1,8-dicarboxyl-ate (1,8-nap) ligand, the whole structure being generated by twofold rotational symmetry. The carboxyl-ate groups of the 1,8-nap ligands act as bridges linking four Ba(2+) ions, while each Ba(2+) ion is eight-coordinated by O atoms from four 1,8-nap ligands and two coordinating water mol-ecules. In the crystal, there are O-H⋯O hydrogen bonds involving the water mol-ecules and carboxyl-ate O atoms in the BaO8 polyhedra. Each BaO8 polyhedron is connected via corner-sharing water O atoms or edge-sharing ligand O atoms, forming a sheet parallel to the bc plane. These sheets stack along the a-axis direction and are connected via van der Waals forces only. The naphthalene groups protrude above and below the layers of the BaO8 polyhedra and there are voids of ca 208 Å(3) bounded by these groups. No residual electron density was found in this region. The crystal studied was twinned by pseudo-merohedry, with a refined twin component ratio of 0.5261 (1):0.4739 (1).

Entities:  

Year:  2013        PMID: 23634013      PMCID: PMC3629495          DOI: 10.1107/S1600536813006259

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For other compounds based on 1,8-nap ligands, see: Wen et al. (2007 ▶, 2008 ▶); Zhang et al. (2008 ▶); Fu et al. (2011 ▶).

Experimental

Crystal data

[Ba(C12H6O4)(H2O)2] M = 369.52 Orthorhombic, a = 8.9643 (11) Å b = 30.539 (6) Å c = 8.9625 (12) Å V = 2453.6 (7) Å3 Z = 8 Mo Kα radiation μ = 3.25 mm−1 T = 296 K 0.20 × 0.05 × 0.05 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.563, T max = 0.855 7968 measured reflections 1511 independent reflections 1344 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.043 S = 1.05 1511 reflections 85 parameters H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.57 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813006259/su2556sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813006259/su2556Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ba(C12H6O4)(H2O)2]F(000) = 1408
Mr = 369.52Dx = 2.001 Mg m3
Orthorhombic, IbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -I 2b 2cCell parameters from 2836 reflections
a = 8.9643 (11) Åθ = 2.7–27.1°
b = 30.539 (6) ŵ = 3.25 mm1
c = 8.9625 (12) ÅT = 296 K
V = 2453.6 (7) Å3Prism, colourless
Z = 80.20 × 0.05 × 0.05 mm
Bruker APEXII CCD area-detector diffractometer1511 independent reflections
Radiation source: fine-focus sealed tube1344 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
Detector resolution: 83.33 pixels mm-1θmax = 28.4°, θmin = 1.3°
ω scansh = −11→5
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −40→38
Tmin = 0.563, Tmax = 0.855l = −11→10
7968 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.019Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.043H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0197P)2 + 0.1976P] where P = (Fo2 + 2Fc2)/3
1511 reflections(Δ/σ)max = 0.001
85 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.57 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ba10.61452 (2)0.00000.25000.02892 (7)
O10.4190 (2)0.05878 (6)0.5240 (3)0.0360 (5)
C10.3754 (3)0.07360 (9)0.4035 (4)0.0236 (6)
O20.3671 (2)0.05119 (7)0.2858 (2)0.0341 (5)
C20.3410 (3)0.12190 (9)0.3935 (3)0.0253 (6)
O30.7500−0.04396 (9)0.00000.0418 (8)
H30.7197−0.0594−0.07420.050*
C30.25000.14342 (12)0.50000.0239 (8)
C40.25000.19041 (12)0.50000.0324 (10)
C50.3323 (4)0.21277 (11)0.3902 (5)0.0486 (10)
H50.33250.24320.38990.058*
C60.4105 (4)0.19121 (11)0.2860 (4)0.0527 (10)
H60.46100.20670.21230.063*
C70.4163 (4)0.14507 (10)0.2877 (3)0.0386 (8)
H70.47200.13030.21600.046*
U11U22U33U12U13U23
Ba10.01894 (11)0.03182 (12)0.03599 (14)0.0000.0000.00999 (13)
O10.0321 (12)0.0315 (11)0.0445 (13)0.0027 (9)−0.0065 (10)0.0124 (10)
C10.0140 (12)0.0213 (14)0.0356 (16)−0.0012 (10)0.0042 (11)−0.0009 (12)
O20.0330 (11)0.0314 (11)0.0380 (14)−0.0029 (8)0.0096 (8)−0.0132 (9)
C20.0279 (15)0.0225 (15)0.0255 (15)−0.0033 (12)−0.0016 (11)−0.0004 (12)
O30.0412 (19)0.0472 (18)0.037 (2)0.000−0.0162 (15)0.000
C30.025 (2)0.0220 (19)0.025 (2)0.000−0.0046 (16)0.000
C40.034 (2)0.022 (2)0.041 (3)0.000−0.0010 (19)0.000
C50.061 (2)0.0203 (17)0.065 (3)−0.0016 (16)0.0042 (19)0.0087 (16)
C60.067 (2)0.0326 (18)0.058 (3)−0.0034 (16)0.0213 (19)0.0164 (15)
C70.0463 (18)0.0366 (17)0.033 (2)−0.0007 (14)0.0128 (13)0.0060 (13)
Ba1—O1i2.723 (2)C2—C71.362 (4)
Ba1—O1ii2.723 (2)C2—C31.417 (3)
Ba1—O2iii2.7324 (19)O3—Ba1viii2.8806 (14)
Ba1—O22.7324 (19)O3—H30.8587
Ba1—O2iv2.7703 (19)C3—C2ix1.417 (3)
Ba1—O2v2.7703 (19)C3—C41.435 (5)
Ba1—O3vi2.8806 (14)C4—C5ix1.407 (4)
Ba1—O32.8806 (14)C4—C51.407 (4)
O1—C11.234 (4)C5—C61.341 (5)
O1—Ba1ii2.723 (2)C5—H50.9300
C1—O21.259 (4)C6—C71.410 (4)
C1—C21.509 (4)C6—H60.9300
O2—Ba1vii2.7703 (19)C7—H70.9300
O1i—Ba1—O1ii167.34 (9)O2iv—Ba1—Ba1vii144.82 (4)
O1i—Ba1—O2iii101.55 (6)O2v—Ba1—Ba1vii144.82 (4)
O1ii—Ba1—O2iii67.71 (6)O3vi—Ba1—Ba1vii114.937 (13)
O1i—Ba1—O267.71 (6)O3—Ba1—Ba1vii114.937 (13)
O1ii—Ba1—O2101.55 (6)C1iii—Ba1—Ba1vii50.87 (4)
O2iii—Ba1—O271.48 (8)C1—Ba1—Ba1vii50.87 (4)
O1i—Ba1—O2iv68.40 (6)O1i—Ba1—Ba1iv96.33 (4)
O1ii—Ba1—O2iv123.25 (6)O1ii—Ba1—Ba1iv96.33 (4)
O2iii—Ba1—O2iv166.59 (9)O2iii—Ba1—Ba1iv144.26 (4)
O2—Ba1—O2iv110.74 (7)O2—Ba1—Ba1iv144.26 (4)
O1i—Ba1—O2v123.25 (6)O2iv—Ba1—Ba1iv35.18 (4)
O1ii—Ba1—O2v68.40 (6)O2v—Ba1—Ba1iv35.18 (4)
O2iii—Ba1—O2v110.74 (7)O3vi—Ba1—Ba1iv65.063 (13)
O2—Ba1—O2v166.59 (9)O3—Ba1—Ba1iv65.063 (13)
O2iv—Ba1—O2v70.35 (8)C1iii—Ba1—Ba1iv129.13 (4)
O1i—Ba1—O3vi108.54 (7)C1—Ba1—Ba1iv129.13 (4)
O1ii—Ba1—O3vi77.00 (7)Ba1vii—Ba1—Ba1iv180.0
O2iii—Ba1—O3vi134.45 (5)C1—O1—Ba1ii149.05 (19)
O2—Ba1—O3vi89.09 (5)O1—C1—O2123.5 (3)
O2iv—Ba1—O3vi58.83 (5)O1—C1—C2118.3 (3)
O2v—Ba1—O3vi80.11 (6)O2—C1—C2118.0 (3)
O1i—Ba1—O377.00 (7)O1—C1—Ba184.93 (16)
O1ii—Ba1—O3108.54 (7)O2—C1—Ba148.58 (13)
O2iii—Ba1—O389.09 (5)C2—C1—Ba1138.71 (18)
O2—Ba1—O3134.45 (5)C1—O2—Ba1111.20 (16)
O2iv—Ba1—O380.11 (6)C1—O2—Ba1vii116.85 (16)
O2v—Ba1—O358.83 (5)Ba1—O2—Ba1vii109.08 (7)
O3vi—Ba1—O3130.13 (3)C7—C2—C3120.9 (3)
O1i—Ba1—C1iii93.75 (7)C7—C2—C1116.6 (3)
O1ii—Ba1—C1iii78.20 (7)C3—C2—C1122.1 (3)
O2iii—Ba1—C1iii20.22 (6)Ba1viii—O3—Ba1124.44 (10)
O2—Ba1—C1iii85.06 (6)Ba1viii—O3—H377.7
O2iv—Ba1—C1iii147.38 (7)Ba1—O3—H3136.4
O2v—Ba1—C1iii100.91 (6)C2—C3—C2ix124.8 (3)
O3vi—Ba1—C1iii152.80 (6)C2—C3—C4117.62 (17)
O3—Ba1—C1iii69.07 (6)C2ix—C3—C4117.62 (17)
O1i—Ba1—C178.20 (7)C5ix—C4—C5121.9 (4)
O1ii—Ba1—C193.75 (7)C5ix—C4—C3119.0 (2)
O2iii—Ba1—C185.06 (6)C5—C4—C3119.0 (2)
O2—Ba1—C120.22 (6)C6—C5—C4121.6 (3)
O2iv—Ba1—C1100.91 (6)C6—C5—H5119.2
O2v—Ba1—C1147.38 (7)C4—C5—H5119.2
O3vi—Ba1—C169.07 (6)C5—C6—C7120.2 (3)
O3—Ba1—C1152.80 (6)C5—C6—H6119.9
C1iii—Ba1—C1101.74 (9)C7—C6—H6119.9
O1i—Ba1—Ba1vii83.67 (4)C2—C7—C6120.5 (3)
O1ii—Ba1—Ba1vii83.67 (4)C2—C7—H7119.7
O2iii—Ba1—Ba1vii35.74 (4)C6—C7—H7119.7
O2—Ba1—Ba1vii35.74 (4)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2x0.862.072.777 (2)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯O2i 0.862.072.777 (2)140

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Poly[mu-aqua-mu4-naphthalene-1,8-dicarboxylato-zinc(II)].

Authors:  Yi Hang Wen; Xia Feng; Yin Hua He; You Zhao Lan; Hong Sun
Journal:  Acta Crystallogr C       Date:  2007-10-13       Impact factor: 1.172

3.  Poly[μ(2)-aqua-μ(4)-naphthalene-1,8-dicarboxyl-ato-manganese(II)].

Authors:  Guo-Ying Zhang; Xin Zhang; Gui-Sheng Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-18
  3 in total

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