Literature DB >> 23633984

Poly[[diaqua-bis-(μ2-4,4'-bipyrid-yl)cobalt(II)] dinitrate tetra-hydrate].

Asma Lehleh1, Mehdi Boutebdja, Adel Beghidja, Chahrazed Beghidja, Hocine Merazig.   

Abstract

The title compound, {[Co(C10H8N2)2(H2O)2](NO3)2·4H2O} n , (C10H8N2 = 4,4'-bipyridine = 4,4'-bpy) is a layered coordination polymer built up from a cationic square grid extending in (101) enclosing uncoordinating nitrate ions and water mol-ecules. The Co(II) ion has site symmetry 2 and one of the 4,4'-bpy ligands is generated by twofold symmetry [two N atoms and two C atoms lie on the rotation axis and the dihedral angle between the pyridine rings is 45.66 (5)°]. The other 4,4'-bpy ligand is generated by a crystallographic inversion center. The Co(II) ion exhibits a slightly distorted octa-hedral coordination geometry defined by two O atoms of two coordinating water mol-ecules and four N atoms from four bridging 4,4'-bpy ligands. The structure is consolidated by O-H⋯O, C-H⋯O and C-H⋯N hydrogen bonds.

Entities:  

Year:  2013        PMID: 23633984      PMCID: PMC3629466          DOI: 10.1107/S1600536813005230

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures with 4,4′-bpy ligands, see: Aoyagi et al. (2000 ▶); Felloni et al. (2002 ▶); Jin et al. (2006 ▶); Tong et al. (2000 ▶).

Experimental

Crystal data

[Co(C10H8N2)2(H2O)2](NO3)2·4H2O M = 603.41 Monoclinic, a = 18.6093 (19) Å b = 11.5447 (13) Å c = 12.1216 (13) Å β = 95.625 (4)° V = 2591.7 (5) Å3 Z = 4 Mo Kα radiation μ = 0.74 mm−1 T = 296 K 0.15 × 0.12 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer 18421 measured reflections 3942 independent reflections 3660 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.083 S = 1.05 3942 reflections 198 parameters 9 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.49 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ATOMS (Dowty, 1995 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813005230/hb7035sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813005230/hb7035Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C10H8N2)2(H2O)2](NO3)2·4H2OZ = 4
Mr = 603.41F(000) = 1252
Monoclinic, C2/cLeast Squares Treatment of 25 SET4 setting angles.
Hall symbol: -C 2ycDx = 1.546 Mg m3
a = 18.6093 (19) ÅMo Kα radiation, λ = 0.71073 Å
b = 11.5447 (13) ŵ = 0.74 mm1
c = 12.1216 (13) ÅT = 296 K
β = 95.625 (4)°Block, orange
V = 2591.7 (5) Å30.15 × 0.12 × 0.10 mm
Bruker APEXII CCD diffractometer3660 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.016
Graphite monochromatorθmax = 30.5°, θmin = 3.7°
Detector resolution: 18.4 pixels mm-1h = −26→26
φ and ω scansk = −16→12
18421 measured reflectionsl = −15→17
3942 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.083w = 1/[σ2(Fo2) + (0.0411P)2 + 2.4609P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
3942 reflectionsΔρmax = 0.41 e Å3
198 parametersΔρmin = −0.49 e Å3
9 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), FC*=KFC[1+0.001XFC2Λ3/SIN(2Θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0058 (4)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.500000.74238 (2)0.750000.0160 (1)
O1W0.56526 (5)0.74192 (8)0.89887 (8)0.0261 (3)
N10.59538 (5)0.74697 (8)0.65303 (8)0.0194 (3)
N20.500000.93206 (11)0.750000.0198 (3)
N30.500001.54917 (12)0.750000.0216 (4)
C10.59232 (6)0.70962 (12)0.54799 (10)0.0261 (3)
C20.65075 (7)0.71019 (13)0.48560 (10)0.0286 (3)
C30.71766 (6)0.75068 (9)0.53140 (10)0.0196 (3)
C40.72032 (7)0.79164 (13)0.63952 (11)0.0289 (3)
C50.65925 (7)0.78805 (12)0.69653 (11)0.0282 (3)
C60.48157 (7)0.99302 (10)0.83731 (10)0.0229 (3)
C70.48067 (7)1.11296 (10)0.84048 (10)0.0237 (3)
C80.500001.17564 (13)0.750000.0189 (4)
C90.500001.30435 (13)0.750000.0191 (4)
C100.55676 (7)1.36752 (10)0.71325 (11)0.0266 (3)
C110.55528 (7)1.48777 (10)0.71687 (12)0.0277 (3)
O10.73251 (11)1.0878 (2)0.67235 (12)0.0843 (7)
O20.67234 (8)1.07423 (15)0.81345 (14)0.0629 (5)
O30.77569 (8)0.99156 (14)0.81568 (13)0.0614 (5)
N40.72726 (8)1.05039 (14)0.76769 (11)0.0436 (4)
O2W0.63340 (8)1.06829 (14)0.48099 (11)0.0546 (4)
O3W0.84438 (9)1.06853 (16)0.53876 (15)0.0701 (6)
H10.548400.681700.515200.0310*
H20.645300.683500.412900.0340*
H40.763200.821600.673800.0350*
H50.662900.815700.768900.0340*
H60.468800.952600.898800.0280*
H70.467201.151300.902700.0280*
H100.595501.329400.686400.0320*
H110.594801.528000.695100.0330*
H120.5930 (7)0.6840 (9)0.9229 (13)0.0240*
H130.5878 (8)0.8051 (9)0.9250 (13)0.0240*
H140.6676 (7)1.0786 (14)0.5353 (10)0.0240*
H150.6542 (8)1.0272 (13)0.4316 (10)0.0240*
H160.8124 (7)1.0682 (15)0.5868 (10)0.0240*
H170.8192 (8)1.0679 (15)0.4727 (8)0.0240*
U11U22U33U12U13U23
Co10.0164 (1)0.0132 (1)0.0193 (1)0.00000.0057 (1)0.0000
O1W0.0236 (4)0.0290 (5)0.0255 (4)0.0002 (3)0.0014 (3)0.0015 (3)
N10.0188 (4)0.0167 (4)0.0240 (5)−0.0001 (3)0.0084 (3)−0.0002 (3)
N20.0233 (6)0.0136 (5)0.0232 (6)0.00000.0060 (5)0.0000
N30.0222 (6)0.0148 (6)0.0282 (7)0.00000.0046 (5)0.0000
C10.0183 (5)0.0369 (6)0.0238 (5)−0.0031 (4)0.0053 (4)−0.0024 (5)
C20.0208 (5)0.0456 (7)0.0203 (5)−0.0038 (5)0.0062 (4)−0.0054 (5)
C30.0175 (5)0.0210 (5)0.0215 (5)−0.0001 (4)0.0075 (4)−0.0002 (4)
C40.0213 (5)0.0377 (7)0.0291 (6)−0.0080 (5)0.0095 (4)−0.0131 (5)
C50.0246 (5)0.0341 (6)0.0278 (6)−0.0069 (5)0.0116 (4)−0.0125 (5)
C60.0321 (6)0.0160 (5)0.0219 (5)−0.0013 (4)0.0090 (4)0.0009 (4)
C70.0344 (6)0.0160 (5)0.0220 (5)−0.0016 (4)0.0099 (4)−0.0022 (4)
C80.0210 (6)0.0135 (6)0.0227 (7)0.00000.0042 (5)0.0000
C90.0232 (7)0.0132 (6)0.0211 (6)0.00000.0032 (5)0.0000
C100.0257 (5)0.0161 (5)0.0401 (7)0.0027 (4)0.0136 (5)0.0021 (4)
C110.0256 (5)0.0168 (5)0.0428 (7)−0.0001 (4)0.0133 (5)0.0036 (5)
O10.0952 (13)0.1202 (16)0.0372 (7)−0.0386 (12)0.0056 (7)0.0049 (9)
O20.0435 (7)0.0741 (10)0.0729 (10)−0.0014 (7)0.0144 (6)0.0011 (8)
O30.0455 (7)0.0733 (10)0.0632 (9)0.0023 (7)−0.0057 (6)−0.0158 (8)
N40.0410 (7)0.0553 (8)0.0341 (6)−0.0193 (6)0.0017 (5)−0.0078 (6)
O2W0.0554 (8)0.0676 (9)0.0402 (6)0.0282 (7)0.0015 (5)0.0039 (6)
O3W0.0645 (10)0.0731 (11)0.0726 (11)−0.0275 (8)0.0065 (8)−0.0237 (9)
Co1—O1W2.0741 (10)N3—C111.3428 (15)
Co1—N12.2235 (10)C1—C21.3840 (17)
Co1—N22.1898 (13)C2—C31.3934 (17)
Co1—N3i2.2306 (14)C3—C41.3896 (18)
Co1—O1Wii2.0741 (10)C3—C3iii1.4860 (16)
Co1—N1ii2.2235 (10)C4—C51.3874 (19)
O1W—H130.884 (12)C6—C71.3854 (16)
O1W—H120.877 (12)C7—C81.3904 (14)
O1—N41.247 (2)C8—C91.486 (2)
O2—N41.241 (2)C9—C10ii1.3922 (15)
O3—N41.229 (2)C9—C101.3922 (15)
O2W—H140.878 (13)C10—C111.3893 (16)
O2W—H150.882 (14)C1—H10.9300
O3W—H170.887 (11)C2—H20.9300
O3W—H160.873 (13)C4—H40.9300
N1—C11.3402 (16)C5—H50.9300
N1—C51.3390 (16)C6—H60.9300
N2—C6ii1.3432 (14)C7—H70.9300
N2—C61.3432 (14)C10—H100.9300
N3—C11ii1.3428 (15)C11—H110.9300
O1W—Co1—N191.74 (4)C1—C2—C3120.21 (11)
O1W—Co1—N290.15 (3)C2—C3—C4115.96 (11)
O1W—Co1—N3i89.85 (3)C2—C3—C3iii121.97 (11)
O1W—Co1—O1Wii179.71 (4)C3iii—C3—C4122.07 (11)
O1W—Co1—N1ii88.27 (4)C3—C4—C5120.29 (12)
N1—Co1—N288.64 (2)N1—C5—C4123.59 (12)
N1—Co1—N3i91.37 (2)N2—C6—C7123.39 (11)
O1Wii—Co1—N188.27 (4)C6—C7—C8119.57 (11)
N1—Co1—N1ii177.27 (4)C7—C8—C9121.36 (7)
N2—Co1—N3i180.00C7ii—C8—C9121.36 (7)
O1Wii—Co1—N290.15 (3)C7—C8—C7ii117.28 (13)
N1ii—Co1—N288.64 (2)C8—C9—C10ii121.59 (7)
O1Wii—Co1—N3i89.85 (3)C8—C9—C10121.59 (7)
N1ii—Co1—N3i91.37 (2)C10—C9—C10ii116.82 (13)
O1Wii—Co1—N1ii91.74 (4)C9—C10—C11119.69 (12)
H12—O1W—H13105.5 (12)N3—C11—C10123.72 (12)
Co1—O1W—H12124.5 (9)N1—C1—H1118.00
Co1—O1W—H13121.8 (9)C2—C1—H1118.00
H14—O2W—H15104.3 (13)C1—C2—H2120.00
H16—O3W—H17105.5 (12)C3—C2—H2120.00
Co1—N1—C5121.61 (8)C5—C4—H4120.00
Co1—N1—C1122.19 (7)C3—C4—H4120.00
C1—N1—C5116.20 (10)C4—C5—H5118.00
Co1—N2—C6ii121.60 (7)N1—C5—H5118.00
C6—N2—C6ii116.81 (12)N2—C6—H6118.00
Co1—N2—C6121.60 (7)C7—C6—H6118.00
C11—N3—C11ii116.27 (12)C6—C7—H7120.00
Co1iv—N3—C11ii121.86 (7)C8—C7—H7120.00
Co1iv—N3—C11121.86 (7)C11—C10—H10120.00
O1—N4—O2118.72 (17)C9—C10—H10120.00
O2—N4—O3120.61 (15)C10—C11—H11118.00
O1—N4—O3120.67 (17)N3—C11—H11118.00
N1—C1—C2123.72 (11)
O1W—Co1—N1—C1156.61 (10)C11ii—N3—C11—C101.48 (17)
N2—Co1—N1—C1−113.29 (9)N1—C1—C2—C30.3 (2)
N3i—Co1—N1—C166.72 (9)C1—C2—C3—C4−1.58 (19)
O1Wii—Co1—N1—C1−23.10 (10)C1—C2—C3—C3iii178.01 (12)
O1W—Co1—N1—C5−23.77 (10)C4—C3—C3iii—C2iii−0.44 (18)
N2—Co1—N1—C566.34 (9)C2—C3—C4—C51.63 (19)
N3i—Co1—N1—C5−113.66 (9)C3iii—C3—C4—C5−177.96 (12)
O1Wii—Co1—N1—C5156.53 (10)C2—C3—C3iii—C2iii−179.98 (15)
O1W—Co1—N2—C6−53.00 (7)C2—C3—C3iii—C4iii0.44 (18)
N1—Co1—N2—C6−144.74 (7)C4—C3—C3iii—C4iii−179.98 (14)
O1Wii—Co1—N2—C6127.00 (7)C3—C4—C5—N1−0.4 (2)
N1ii—Co1—N2—C635.27 (7)N2—C6—C7—C8−0.39 (18)
O1W—Co1—N2—C6ii127.00 (7)C6—C7—C8—C9−179.82 (9)
N1—Co1—N2—C6ii35.27 (7)C6—C7—C8—C7ii0.18 (15)
Co1—N1—C1—C2−179.36 (10)C7—C8—C9—C10ii−44.87 (9)
C5—N1—C1—C21.00 (19)C7ii—C8—C9—C10−44.87 (9)
Co1—N1—C5—C4179.41 (11)C7—C8—C9—C10135.13 (9)
C1—N1—C5—C4−0.95 (19)C8—C9—C10—C11−178.64 (9)
Co1—N2—C6—C7−179.80 (9)C10ii—C9—C10—C111.36 (15)
C6ii—N2—C6—C70.20 (15)C9—C10—C11—N3−2.9 (2)
Co1iv—N3—C11—C10−178.53 (10)
D—H···AD—HH···AD···AD—H···A
O1W—H12···O3Wv0.877 (12)1.801 (12)2.675 (2)174.2 (14)
O1W—H13···O2Wvi0.884 (12)1.790 (12)2.6744 (18)178.7 (16)
O2W—H14···O10.878 (13)1.959 (12)2.827 (2)170.1 (13)
O2W—H15···O2vii0.882 (14)1.906 (14)2.765 (2)164.2 (14)
O3W—H16···O10.873 (13)1.908 (13)2.769 (3)168.9 (14)
O3W—H17···O3vii0.887 (11)2.109 (11)2.958 (2)159.9 (15)
C1—H1···O1Wii0.932.543.0860 (15)117
C11—H11···N1iv0.932.583.1974 (15)124
C11—H11···O3viii0.932.463.209 (2)137
Table 1

Selected bond lengths (Å)

Co1—O1W 2.0741 (10)
Co1—N12.2235 (10)
Co1—N22.1898 (13)
Co1—N3i 2.2306 (14)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H12⋯O3W ii 0.877 (12)1.801 (12)2.675 (2)174.2 (14)
O1W—H13⋯O2W iii 0.884 (12)1.790 (12)2.6744 (18)178.7 (16)
O2W—H14⋯O10.878 (13)1.959 (12)2.827 (2)170.1 (13)
O2W—H15⋯O2iv 0.882 (14)1.906 (14)2.765 (2)164.2 (14)
O3W—H16⋯O10.873 (13)1.908 (13)2.769 (3)168.9 (14)
O3W—H17⋯O3iv 0.887 (11)2.109 (11)2.958 (2)159.9 (15)
C1—H1⋯O1W v 0.932.543.0860 (15)117
C11—H11⋯N1vi 0.932.583.1974 (15)124
C11—H11⋯O3vii 0.932.463.209 (2)137

Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  Crystal structure of catena-poly[[[trans-bis(aceto-nitrile-κN)diaquacobalt(II)]-μ-pyrazine-κ(2) N:N'] dinitrate].

Authors:  Chen Liu; Ashley C Felts; Annaliese E Thuijs; Aaron Useche; Khalil A Abboud
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-01-13
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.