Literature DB >> 23633572

Surface display of a massively variable lipoprotein by a Legionella diversity-generating retroelement.

Diego Arambula1, Wenge Wong, Bob A Medhekar, Huatao Guo, Mari Gingery, Elizabeth Czornyj, Minghsun Liu, Sanghamitra Dey, Partho Ghosh, Jeff F Miller.   

Abstract

Diversity-generating retroelements (DGRs) are a unique family of retroelements that confer selective advantages to their hosts by facilitating localized DNA sequence evolution through a specialized error-prone reverse transcription process. We characterized a DGR in Legionella pneumophila, an opportunistic human pathogen that causes Legionnaires disease. The L. pneumophila DGR is found within a horizontally acquired genomic island, and it can theoretically generate 10(26) unique nucleotide sequences in its target gene, legionella determinent target A (ldtA), creating a repertoire of 10(19) distinct proteins. Expression of the L. pneumophila DGR resulted in transfer of DNA sequence information from a template repeat to a variable repeat (VR) accompanied by adenine-specific mutagenesis of progeny VRs at the 3'end of ldtA. ldtA encodes a twin-arginine translocated lipoprotein that is anchored in the outer leaflet of the outer membrane, with its C-terminal variable region surface exposed. Related DGRs were identified in L. pneumophila clinical isolates that encode unique target proteins with homologous VRs, demonstrating the adaptability of DGR components. This work characterizes a DGR that diversifies a bacterial protein and confirms the hypothesis that DGR-mediated mutagenic homing occurs through a conserved mechanism. Comparative bioinformatics predicts that surface display of massively variable proteins is a defining feature of a subset of bacterial DGRs.

Entities:  

Keywords:  TAT; accelerated evolution; bacterial surface display

Mesh:

Substances:

Year:  2013        PMID: 23633572      PMCID: PMC3657778          DOI: 10.1073/pnas.1301366110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  The twin arginine consensus motif of Tat signal peptides is involved in Sec-independent protein targeting in Escherichia coli.

Authors:  N R Stanley; T Palmer; B C Berks
Journal:  J Biol Chem       Date:  2000-04-21       Impact factor: 5.157

2.  Tropism switching in Bordetella bacteriophage defines a family of diversity-generating retroelements.

Authors:  Sergei Doulatov; Asher Hodes; Lixin Dai; Neeraj Mandhana; Minghsun Liu; Rajendar Deora; Robert W Simons; Steven Zimmerly; Jeff F Miller
Journal:  Nature       Date:  2004-09-23       Impact factor: 49.962

3.  Phage-displayed antibody libraries of synthetic heavy chain complementarity determining regions.

Authors:  Sachdev S Sidhu; Bing Li; Yvonne Chen; Frederic A Fellouse; Charles Eigenbrot; Germaine Fuh
Journal:  J Mol Biol       Date:  2004-04-23       Impact factor: 5.469

4.  SignalP 4.0: discriminating signal peptides from transmembrane regions.

Authors:  Thomas Nordahl Petersen; Søren Brunak; Gunnar von Heijne; Henrik Nielsen
Journal:  Nat Methods       Date:  2011-09-29       Impact factor: 28.547

5.  Identification and subcellular localization of the Legionella pneumophila IcmX protein: a factor essential for establishment of a replicative organelle in eukaryotic host cells.

Authors:  M Matthews; C R Roy
Journal:  Infect Immun       Date:  2000-07       Impact factor: 3.441

6.  Immunolocalization of the Mip protein of intracellularly and extracellularly grown Legionella pneumophila.

Authors:  J H Helbig; P C Lück; M Steinert; E Jacobs; M Witt
Journal:  Lett Appl Microbiol       Date:  2001-02       Impact factor: 2.858

7.  Regulation, integrase-dependent excision, and horizontal transfer of genomic islands in Legionella pneumophila.

Authors:  Monika Lautner; Eva Schunder; Vroni Herrmann; Klaus Heuner
Journal:  J Bacteriol       Date:  2013-01-25       Impact factor: 3.490

8.  Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity.

Authors:  Christel Cazalet; Christophe Rusniok; Holger Brüggemann; Nora Zidane; Arnaud Magnier; Laurence Ma; Magalie Tichit; Sophie Jarraud; Christiane Bouchier; François Vandenesch; Frank Kunst; Jérôme Etienne; Philippe Glaser; Carmen Buchrieser
Journal:  Nat Genet       Date:  2004-10-03       Impact factor: 38.330

9.  A putative twin-arginine translocation pathway in Legionella pneumophila.

Authors:  Emmy De Buck; Ilya Lebeau; Liesbeth Maes; Nick Geukens; Eef Meyen; Lieve Van Mellaert; Jozef Anné; Elke Lammertyn
Journal:  Biochem Biophys Res Commun       Date:  2004-04-30       Impact factor: 3.575

10.  Target site recognition by a diversity-generating retroelement.

Authors:  Huatao Guo; Longping V Tse; Angela W Nieh; Elizabeth Czornyj; Steven Williams; Sabrina Oukil; Vincent B Liu; Jeff F Miller
Journal:  PLoS Genet       Date:  2011-12-15       Impact factor: 5.917

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  29 in total

1.  Comprehensive Spatial Analysis of the Borrelia burgdorferi Lipoproteome Reveals a Compartmentalization Bias toward the Bacterial Surface.

Authors:  Alexander S Dowdell; Maxwell D Murphy; Christina Azodi; Selene K Swanson; Laurence Florens; Shiyong Chen; Wolfram R Zückert
Journal:  J Bacteriol       Date:  2017-02-28       Impact factor: 3.490

2.  Expression profiling of the bloom-forming cyanobacterium Nodularia CCY9414 under light and oxidative stress conditions.

Authors:  Matthias Kopf; Fred Möke; Hermann Bauwe; Wolfgang R Hess; Martin Hagemann
Journal:  ISME J       Date:  2015-02-17       Impact factor: 10.302

Review 3.  Core Concepts: How diversity-generating retroelements promote mutation and adaptation in myriad microbes.

Authors:  Carrie Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-03       Impact factor: 11.205

Review 4.  Diversity-generating Retroelements in Phage and Bacterial Genomes.

Authors:  Huatao Guo; Diego Arambula; Partho Ghosh; Jeff F Miller
Journal:  Microbiol Spectr       Date:  2014-12

Review 5.  Secretion of bacterial lipoproteins: through the cytoplasmic membrane, the periplasm and beyond.

Authors:  Wolfram R Zückert
Journal:  Biochim Biophys Acta       Date:  2014-04-26

6.  Identification and classification of reverse transcriptases in bacterial genomes and metagenomes.

Authors:  Fatemeh Sharifi; Yuzhen Ye
Journal:  Nucleic Acids Res       Date:  2022-03-21       Impact factor: 19.160

Review 7.  Bacterial genome instability.

Authors:  Elise Darmon; David R F Leach
Journal:  Microbiol Mol Biol Rev       Date:  2014-03       Impact factor: 11.056

8.  Novel Siphoviridae Bacteriophages Infecting Bacteroides uniformis Contain Diversity Generating Retroelement.

Authors:  Stina Hedžet; Maja Rupnik; Tomaž Accetto
Journal:  Microorganisms       Date:  2021-04-21

9.  Ecology and molecular targets of hypermutation in the global microbiome.

Authors:  Simon Roux; Blair G Paul; Sarah C Bagby; Stephen Nayfach; Michelle A Allen; Graeme Attwood; Ricardo Cavicchioli; Ludmila Chistoserdova; Robert J Gruninger; Steven J Hallam; Maria E Hernandez; Matthias Hess; Wen-Tso Liu; Tim A McAllister; Michelle A O'Malley; Xuefeng Peng; Virginia I Rich; Scott R Saleska; Emiley A Eloe-Fadrosh
Journal:  Nat Commun       Date:  2021-05-24       Impact factor: 14.919

Review 10.  Surface-Exposed Lipoproteins: An Emerging Secretion Phenomenon in Gram-Negative Bacteria.

Authors:  Marlena M Wilson; Harris D Bernstein
Journal:  Trends Microbiol       Date:  2015-12-17       Impact factor: 18.230

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