Literature DB >> 23633140

New roles for old characters: an educational primer for use with "Vps factors are required for efficient transcription elongation in budding yeast".

Andrea A Duina1.   

Abstract

An article from Alan Hinnebusch's laboratory in the March 2013 issue of GENETICS establishes an exciting new link between proteins with well-established roles in the endomembrane system and the process of transcription elongation. This Primer article provides tools needed for students to fully appreciate, analyze, and critically evaluate the experiments and interpretations of Gaur et al. (2013). The primer includes detailed descriptions of techniques used in the study, such as the chromatin immunoprecipitation assay and assays for transcription elongation, and it provides a framework to facilitate an understanding of how a combination of genetic, biochemical, and cell microscopy experimental approaches were used by the authors to converge on a single major conclusion. Suggestions for using this Primer article in an undergraduate or graduate-level course in conjunction with the original article to promote student learning are also presented.

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Year:  2013        PMID: 23633140      PMCID: PMC3632475          DOI: 10.1534/genetics.113.150763

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  13 in total

Review 1.  Receptor downregulation and multivesicular-body sorting.

Authors:  David J Katzmann; Greg Odorizzi; Scott D Emr
Journal:  Nat Rev Mol Cell Biol       Date:  2002-12       Impact factor: 94.444

2.  A simple in vivo assay for measuring the efficiency of gene length-dependent processes in yeast mRNA biogenesis.

Authors:  Macarena Morillo-Huesca; Manuela Vanti; Sebastián Chávez
Journal:  FEBS J       Date:  2006-02       Impact factor: 5.542

Review 3.  Regulation and epigenetic control of transcription at the nuclear periphery.

Authors:  Sara Ahmed; Jason H Brickner
Journal:  Trends Genet       Date:  2007-06-12       Impact factor: 11.639

4.  Disrupting vesicular trafficking at the endosome attenuates transcriptional activation by Gcn4.

Authors:  Fan Zhang; Naseem A Gaur; Jiri Hasek; Soon-ja Kim; Hongfang Qiu; Mark J Swanson; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2008-09-15       Impact factor: 4.272

5.  NuA4 lysine acetyltransferase Esa1 is targeted to coding regions and stimulates transcription elongation with Gcn5.

Authors:  Daniel S Ginsburg; Chhabi K Govind; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2009-10-12       Impact factor: 4.272

6.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

7.  Vps factors are required for efficient transcription elongation in budding yeast.

Authors:  Naseem A Gaur; Jiri Hasek; Donna Garvey Brickner; Hongfang Qiu; Fan Zhang; Chi-Ming Wong; Ivana Malcova; Pavla Vasicova; Jason H Brickner; Alan G Hinnebusch
Journal:  Genetics       Date:  2013-01-18       Impact factor: 4.562

8.  Hpr1 is preferentially required for transcription of either long or G+C-rich DNA sequences in Saccharomyces cerevisiae.

Authors:  S Chávez; M García-Rubio; F Prado; A Aguilera
Journal:  Mol Cell Biol       Date:  2001-10       Impact factor: 4.272

Review 9.  Protein transport from the late Golgi to the vacuole in the yeast Saccharomyces cerevisiae.

Authors:  Katherine Bowers; Tom H Stevens
Journal:  Biochim Biophys Acta       Date:  2005-07-10

Review 10.  Progression through the RNA polymerase II CTD cycle.

Authors:  Stephen Buratowski
Journal:  Mol Cell       Date:  2009-11-25       Impact factor: 17.970

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