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Literature DB >> 23631909

A simple shotgun proteomics method for rapid bacterial identification.

Dobryan M Tracz¹, Stuart J McCorrister, Patrick M Chong, David M Lee, Cindi R Corbett, Garrett R Westmacott.

Abstract

Bacterial pathogens were rapidly identified by shotgun proteomics using a novel, easy to implement database search strategy. Peptide sequence data from nano-LC-MS/MS was searched against a database represented by concatenated proteomes of completed genome sequences. Select bacterial species, including BSL-3 select agents, were used to demonstrate this method. Crown

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Year: 2013 PMID： 23631909 DOI： 10.1016/j.mimet.2013.04.008

Source DB: PubMed Journal: J Microbiol Methods ISSN： 0167-7012 Impact factor: 2.363

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Cited

8 in total

1. Assessment of marker proteins identified in whole cell extracts for bacterial speciation using liquid chromatography electrospray ionization tandem mass spectrometry.

Authors: Jennifer Kooken; Karen Fox; Alvin Fox; David Wunschel
Journal: Mol Cell Probes Date: 2013-08-29 Impact factor: 2.365

2. Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics.

Authors: Fredrik Boulund; Roger Karlsson; Lucia Gonzales-Siles; Anna Johnning; Nahid Karami; Omar Al-Bayati; Christina Åhrén; Edward R B Moore; Erik Kristiansson
Journal: Mol Cell Proteomics Date: 2017-04-18 Impact factor: 5.911

3. Identification of Microorganisms by Liquid Chromatography-Mass Spectrometry (LC-MS¹) and in Silico Peptide Mass Libraries.

Authors: Peter Lasch; Andy Schneider; Christian Blumenscheit; Joerg Doellinger
Journal: Mol Cell Proteomics Date: 2020-09-30 Impact factor: 5.911

4. Rapid Classification and Identification of Multiple Microorganisms with Accurate Statistical Significance via High-Resolution Tandem Mass Spectrometry.

Authors: Gelio Alves; Guanghui Wang; Aleksey Y Ogurtsov; Steven K Drake; Marjan Gucek; David B Sacks; Yi-Kuo Yu
Journal: J Am Soc Mass Spectrom Date: 2018-06-05 Impact factor: 3.109

Review 8. Current Status of Matrix-Assisted Laser Desorption/Ionization-Time-of-Flight Mass Spectrometry (MALDI-TOF MS) in Clinical Diagnostic Microbiology.

Authors: Sachio Tsuchida; Hiroshi Umemura; Tomohiro Nakayama
Journal: Molecules Date: 2020-10-17 Impact factor: 4.411

8 in total

A simple shotgun proteomics method for rapid bacterial identification.

1. Assessment of marker proteins identified in whole cell extracts for bacterial speciation using liquid chromatography electrospray ionization tandem mass spectrometry.

2. Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics.

3. Identification of Microorganisms by Liquid Chromatography-Mass Spectrometry (LC-MS¹) and in Silico Peptide Mass Libraries.

4. Rapid Classification and Identification of Multiple Microorganisms with Accurate Statistical Significance via High-Resolution Tandem Mass Spectrometry.

Review 5. Mass spectrometry-based microbiological testing for blood stream infection.

6. Direct Identification of Urinary Tract Pathogens by MALDI-TOF/TOF Analysis and De Novo Peptide Sequencing.

Review 7. Elucidating Host-Pathogen Interactions Based on Post-Translational Modifications Using Proteomics Approaches.

Review 8. Current Status of Matrix-Assisted Laser Desorption/Ionization-Time-of-Flight Mass Spectrometry (MALDI-TOF MS) in Clinical Diagnostic Microbiology.

A simple shotgun proteomics method for rapid bacterial identification.

1. Assessment of marker proteins identified in whole cell extracts for bacterial speciation using liquid chromatography electrospray ionization tandem mass spectrometry.

2. Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics.

3. Identification of Microorganisms by Liquid Chromatography-Mass Spectrometry (LC-MS1) and in Silico Peptide Mass Libraries.

4. Rapid Classification and Identification of Multiple Microorganisms with Accurate Statistical Significance via High-Resolution Tandem Mass Spectrometry.

Review 5. Mass spectrometry-based microbiological testing for blood stream infection.

6. Direct Identification of Urinary Tract Pathogens by MALDI-TOF/TOF Analysis and De Novo Peptide Sequencing.

Review 7. Elucidating Host-Pathogen Interactions Based on Post-Translational Modifications Using Proteomics Approaches.

Review 8. Current Status of Matrix-Assisted Laser Desorption/Ionization-Time-of-Flight Mass Spectrometry (MALDI-TOF MS) in Clinical Diagnostic Microbiology.

3. Identification of Microorganisms by Liquid Chromatography-Mass Spectrometry (LC-MS¹) and in Silico Peptide Mass Libraries.