| Literature DB >> 23631808 |
Hitoshi Hiura1, Masashi Toyoda, Hiroaki Okae, Masahiro Sakurai, Naoko Miyauchi, Akiko Sato, Nobutaka Kiyokawa, Hajime Okita, Yoshitaka Miyagawa, Hidenori Akutsu, Koichiro Nishino, Akihiro Umezawa, Takahiro Arima.
Abstract
BACKGROUND: hiPSCs are generated through epigenetic reprogramming of somatic tissue. Genomic imprinting is an epigenetic phenomenon through which monoallelic gene expression is regulated in a parent-of-origin-specific manner. Reprogramming relies on the successful erasure of marks of differentiation while maintaining those required for genomic imprinting. Loss of imprinting (LOI), which occurs in many types of malignant tumors, would hinder the clinical application of hiPSCs.Entities:
Mesh:
Substances:
Year: 2013 PMID: 23631808 PMCID: PMC3751563 DOI: 10.1186/1471-2156-14-32
Source DB: PubMed Journal: BMC Genet ISSN: 1471-2156 Impact factor: 2.797
LOI and MOI in hiPSCs
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| | | (RsaI) | (ApaI) | (MnlI) | (AflIII) | (TaaI) | (SmaI) | (MboI) | (RsaI) | ||||||||
| Cell | Passage | gDNA | cDNA | gDNA | cDNA | gDNA | cDNA | gDNA | cDNA | gDNA | cDNA | gDNA | cDNA | gDNA | cDNA | gDNA | cDNA |
| AM936EP | P9 | a/b | a | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -2 | P13 | a/b | a | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -2 | P19 | a/b | a | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -2 | P35 | a/b | a | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -3 | P9 | a/b | a | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -3 | P21 | a/b | a | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -3 | P29 | a/b | b | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -3 | P36 | a/b | a | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -7 | P12 | a/b | a | b | - | a | - | b | - | a/b | a/b | a | - | b | - | a/b | a |
| AM-iPS -7 | P22 | a/b | a | b | - | a | - | b | - | a/b | a/b | a | - | b | - | a/b | a |
| AM-iPS -7 | P32 | a/b | a | b | - | a | - | b | - | a/b | a/b | a | - | b | - | a/b | a |
| AM-iPS -8 | P13 | a/b | a | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -8 | P20 | a/b | a | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -8 | P37 | a/b | a | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -20 | P8 | N.T. | a | N.T. | - | N.T. | - | N.T. | - | N.T. | a | N.T. | - | N.T. | - | N.T. | a |
| AM-iPS -20 | P11 | a/b | a | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -20 | P14 | a/b | a | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -20 | P16 | a/b | N.D. | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| AM-iPS -20 | P32 | a/b | N.D. | b | - | a | - | b | - | a/b | a | a | - | b | - | a/b | a |
| PL551Ar | P16 | a/b | a | a/b | a | b | - | a/b | N.D. | b | - | b | N.D. | a | - | a | - |
| PAE-iPS -05 | P19 | a/b | a | a/b | N.D. | b | - | a/b | N.D. | b | - | b | - | a | - | a | - |
| PAE-iPS -05 | P31 | a/b | a | a/b | N.D. | b | - | a/b | N.D. | b | - | b | - | a | - | a | - |
| PAE-iPS -11 | P14 | a/b | a | a/b | N.D. | b | - | a/b | N.D. | b | - | b | - | a | - | a | - |
| PAE-iPS -11 | P18 | a/b | a | a/b | N.D. | b | - | a/b | N.D. | b | - | b | - | a | - | a | - |
| PAE-iPS -11 | P30 | a/b | a | a/b | N.D. | b | - | a/b | N.D. | b | - | b | - | a | - | a | - |
| MRC-5 | - | a/b | N.D. | b | - | a | - | b | - | a/b | a/b | a/b | N.D. | a/b | N.D. | a | - |
| MRC-iPS -16 | P30 | a/b | N.D. | b | - | a | - | b | - | a/b | ND | a/b | b | a/b | a | a | - |
| MRC-iPS -25 | P6 | a/b | N.D. | b | - | a | - | b | - | a/b | ND | a/b | b | a/b | a | a | - |
| MRC-iPS -25 | P30 | a/b | N.D. | b | - | a | - | b | - | a/b | ND | a/b | b | a/b | a | a | - |
| MRC-iPS -40 | P11 | a/b | N.D. | b | - | a | - | b | - | a/b | ND | a/b | b | a/b | a | a | - |
| MRC-iPS -40 | P30 | a/b | N.D. | b | - | a | - | b | - | a/b | ND | a/b | b | a/b | a | a | - |
| UtE1104 | P9 | a/b | N.D. | a | - | a/b | a/b | a/b | b | a/b | a/b | b | N.D. | b | - | a | - |
| UtE-iPS -6 | P20 | a/b | N.D. | a | - | a/b | a/b | a/b | a/b | a/b | a/b | b | - | b | - | a | - |
| UtE-iPS -6 | P31 | a/b | b | a | - | a/b | a/b | a/b | a/b | a/b | a/b | b | - | b | - | a | - |
| UtE-iPS -11 | P13 | a/b | N.D. | a | - | a/b | N.D. | a/b | a/b | a/b | a | b | N.D. | b | - | a | - |
| UtE-iPS -11 | P20 | a/b | N.D. | a | - | a/b | N.D. | a/b | a/b | a/b | a/b | b | N.D. | b | - | a | - |
| UtE-iPS -11 | P30 | a/b | N.D. | a | - | a/b | N.D. | a/b | a/b | a/b | a | b | - | b | - | a | - |
| Edom22 | P5 | b | - | a/b | a/b | a | - | a/b | b | b | - | a/b | a | a | - | a | - |
| Edom-iPS -1 | P27 | b | - | a/b | N.D. | a | - | a/b | b | b | - | a/b | a | a | - | a | - |
| hES 3 | P29 | a/b | a | b | - | a/b | a | a/b | b | b | - | a | - | a/b | b | a | - |
| SEES 1 | P10 | a/b | a | a/b | a | a | - | b | - | a/b | b | a | - | a | - | a | - |
| SEES 4 | P9 | a/b | b | a/b | a | a | - | b | - | b | - | a | - | a/b | b | a | - |
A summary of LOI and MOI RFLP data for the 8 imprinted genes analyzed in 22 hiPSCs and 3 control hES cell lines. hiPSCs derived from extraembryonic amniotic membrane (AM-iPS), embryonic lung tissue (MRC-iPS), uterine endometrium (UtE-iPS), adult menstrual blood (Edom-iPS) and extraembryonic placental tissue (PAE-iPS). Samples were analyzed at the specified passage number. (-): not informative.
Figure 1Loss of imprinting in hiPSCs. Loss of allelic expression of GTL2 in cell line AM-iPS-7 (1) and PEG1 in cell lines UtE-iPS-6 and 11 (2). PCR products amplified from paired genomic DNA and cDNA samples were digested with the specified restriction enzymes (A). Results were confirmed by direct sequencing (B). AM936EP and UtE1104 are primary culture cells made from amniotic membrane and uterine endometrium cells, respectively. Band ‘a’: without a restriction site. Band ‘b’: with a restriction site.
Figure 2Reduced expression of hiPSCs with LOI. Gene expression levels of GTL2 (A) and PEG1 (B) in the original and the passaged hiPSCs were compared to that of hESCs. The GAPDH ratio was calculated. The bars indicate the means ± standard deviation (SD) from two replicates. N.D.: not determined.
Figure 3Aberrant DNA methylation of hiPSCs with LOI. Bisulfite PCR sequencing methylation assay of genomic DNA prepared from AM-iPS-7 and MRC-iPS-25 at the IG-DMR (GTL2-DMR) (A) and UtE-iPS-6 and 11 at PEG1 (B). Each row represents a unique methylation profile within the pool of 20 clones sequenced. Closed and open circles represent methylated and unmethylated CpGs, respectively. The numbers represent the percentages of methylation by bisulfite sequencing. SNPs are shown by arrows.
Figure 4Reactivation of expression by treatment with VPA. Reactivation of GTL2 expression by treatment with VPA (A). The expression level of GTL2 mRNA was restored by VPA treatment. Gene expression of the original cells and of the hiPSCs was compared to that of hESCs. The GAPDH ratio was calculated. The bars indicate the means ± SD from two replicates. The imprinting status of GTL2 was stable in response to VPA (B). Methylation status in bisulfite-PCR sequencing analyses of IG-DMR is unchanged (C). Histone modifications of the GTL2 promoter were changed by VPA (D). The immunoprecipitation/input ratio was calculated. The bars indicate the means ± SD from three replicates.