Literature DB >> 23628002

Phytochemical genomics--a new trend.

Kazuki Saito1.   

Abstract

Phytochemical genomics is a recently emerging field, which investigates the genomic basis of the synthesis and function of phytochemicals (plant metabolites), particularly based on advanced metabolomics. The chemical diversity of the model plant Arabidopsis thaliana is larger than previously expected, and the gene-to-metabolite correlations have been elucidated mostly by an integrated analysis of transcriptomes and metabolomes. For example, most genes involved in the biosynthesis of flavonoids in Arabidopsis have been characterized by this method. A similar approach has been applied to the functional genomics for production of phytochemicals in crops and medicinal plants. Great promise is seen in metabolic quantitative loci analysis in major crops such as rice and tomato, and identification of novel genes involved in the biosynthesis of bioactive specialized metabolites in medicinal plants.
Copyright © 2013 The Author. Published by Elsevier Ltd.. All rights reserved.

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Year:  2013        PMID: 23628002     DOI: 10.1016/j.pbi.2013.04.001

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  22 in total

1.  Genome-Wide Association Study With Growth-Related Traits and Secondary Metabolite Contents in Red- and White-Heart Chinese Fir.

Authors:  Sen Cao; Hongjing Duan; Yuhan Sun; Ruiyang Hu; Bo Wu; Jun Lin; Wenjian Deng; Yun Li; Huiquan Zheng
Journal:  Front Plant Sci       Date:  2022-06-30       Impact factor: 6.627

2.  High-throughput sequencing and de novo transcriptome assembly of Swertia japonica to identify genes involved in the biosynthesis of therapeutic metabolites.

Authors:  Amit Rai; Michimi Nakamura; Hiroki Takahashi; Hideyuki Suzuki; Kazuki Saito; Mami Yamazaki
Journal:  Plant Cell Rep       Date:  2016-07-04       Impact factor: 4.570

3.  Transcriptomic landscape of Pueraria lobata demonstrates potential for phytochemical study.

Authors:  Rongchun Han; Hiroki Takahashi; Michimi Nakamura; Naoko Yoshimoto; Hideyuki Suzuki; Daisuke Shibata; Mami Yamazaki; Kazuki Saito
Journal:  Front Plant Sci       Date:  2015-06-22       Impact factor: 5.753

4.  Metabolome-genome-wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism.

Authors:  Fumio Matsuda; Ryo Nakabayashi; Zhigang Yang; Yozo Okazaki; Jun-ichi Yonemaru; Kaworu Ebana; Masahiro Yano; Kazuki Saito
Journal:  Plant J       Date:  2014-11-03       Impact factor: 6.417

5.  Antimicrobial peptide FF/CAP18 induces apoptotic cell death in HCT116 colon cancer cells via changes in the metabolic profile.

Authors:  Kengo Kuroda; Tomokazu Fukuda; Hiroshi Isogai; Kazuhiko Okumura; Marija Krstic-Demonacos; Emiko Isogai
Journal:  Int J Oncol       Date:  2015-02-10       Impact factor: 5.650

6.  Toward better annotation in plant metabolomics: isolation and structure elucidation of 36 specialized metabolites from Oryza sativa (rice) by using MS/MS and NMR analyses.

Authors:  Zhigang Yang; Ryo Nakabayashi; Yozo Okazaki; Tetsuya Mori; Satoshi Takamatsu; Susumu Kitanaka; Jun Kikuchi; Kazuki Saito
Journal:  Metabolomics       Date:  2013-12-29       Impact factor: 4.290

7.  Metabolomics for biomarker discovery in gastroenterological cancer.

Authors:  Shin Nishiumi; Makoto Suzuki; Takashi Kobayashi; Atsuki Matsubara; Takeshi Azuma; Masaru Yoshida
Journal:  Metabolites       Date:  2014-07-07

8.  RNA-seq Transcriptome Analysis of Panax japonicus, and Its Comparison with Other Panax Species to Identify Potential Genes Involved in the Saponins Biosynthesis.

Authors:  Amit Rai; Mami Yamazaki; Hiroki Takahashi; Michimi Nakamura; Mareshige Kojoma; Hideyuki Suzuki; Kazuki Saito
Journal:  Front Plant Sci       Date:  2016-04-12       Impact factor: 5.753

9.  Comparative and parallel genome-wide association studies for metabolic and agronomic traits in cereals.

Authors:  Wei Chen; Wensheng Wang; Meng Peng; Liang Gong; Yanqiang Gao; Jian Wan; Shouchuang Wang; Lei Shi; Bin Zhou; Zongmei Li; Xiaoxi Peng; Chenkun Yang; Lianghuan Qu; Xianqing Liu; Jie Luo
Journal:  Nat Commun       Date:  2016-10-04       Impact factor: 14.919

10.  Boosting Sensitivity in Liquid Chromatography-Fourier Transform Ion Cyclotron Resonance-Tandem Mass Spectrometry for Product Ion Analysis of Monoterpene Indole Alkaloids.

Authors:  Ryo Nakabayashi; Hiroshi Tsugawa; Mariko Kitajima; Hiromitsu Takayama; Kazuki Saito
Journal:  Front Plant Sci       Date:  2015-12-17       Impact factor: 5.753

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