Literature DB >> 23625719

Harnessing graphics processing units for improved neuroimaging statistics.

Anders Eklund1, Mattias Villani, Stephen M Laconte.   

Abstract

Simple models and algorithms based on restrictive assumptions are often used in the field of neuroimaging for studies involving functional magnetic resonance imaging, voxel based morphometry, and diffusion tensor imaging. Nonparametric statistical methods or flexible Bayesian models can be applied rather easily to yield more trustworthy results. The spatial normalization step required for multisubject studies can also be improved by taking advantage of more robust algorithms for image registration. A common drawback of algorithms based on weaker assumptions, however, is the increase in computational complexity. In this short overview, we will therefore present some examples of how inexpensive PC graphics hardware, normally used for demanding computer games, can be used to enable practical use of more realistic models and accurate algorithms, such that the outcome of neuroimaging studies really can be trusted.

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Year:  2013        PMID: 23625719     DOI: 10.3758/s13415-013-0165-7

Source DB:  PubMed          Journal:  Cogn Affect Behav Neurosci        ISSN: 1530-7026            Impact factor:   3.526


  78 in total

Review 1.  The problem of functional localization in the human brain.

Authors:  Matthew Brett; Ingrid S Johnsrude; Adrian M Owen
Journal:  Nat Rev Neurosci       Date:  2002-03       Impact factor: 34.870

2.  Spatial normalization and averaging of diffusion tensor MRI data sets.

Authors:  Derek K Jones; Lewis D Griffin; Daniel C Alexander; Marco Catani; Mark A Horsfield; Robert Howard; Steve C R Williams
Journal:  Neuroimage       Date:  2002-10       Impact factor: 6.556

3.  Fully Bayesian spatio-temporal modeling of FMRI data.

Authors:  Mark W Woolrich; Mark Jenkinson; J Michael Brady; Stephen M Smith
Journal:  IEEE Trans Med Imaging       Date:  2004-02       Impact factor: 10.048

4.  Does parametric fMRI analysis with SPM yield valid results? An empirical study of 1484 rest datasets.

Authors:  Anders Eklund; Mats Andersson; Camilla Josephson; Magnus Johannesson; Hans Knutsson
Journal:  Neuroimage       Date:  2012-04-10       Impact factor: 6.556

Review 5.  Decoding fMRI brain states in real-time.

Authors:  Stephen M LaConte
Journal:  Neuroimage       Date:  2010-06-30       Impact factor: 6.556

Review 6.  A survey of medical image registration on graphics hardware.

Authors:  O Fluck; C Vetter; W Wein; A Kamen; B Preim; R Westermann
Journal:  Comput Methods Programs Biomed       Date:  2010-11-26       Impact factor: 5.428

7.  Cytoarchitectural maps of the human brain in standard anatomical space.

Authors:  P E Roland; S Geyer; K Amunts; T Schormann; A Schleicher; A Malikovic; K Zilles
Journal:  Hum Brain Mapp       Date:  1997       Impact factor: 5.038

8.  Use of jackknife resampling techniques to estimate the confidence intervals of fMRI parameters.

Authors:  B B Biswal; P A Taylor; J L Ulmer
Journal:  J Comput Assist Tomogr       Date:  2001 Jan-Feb       Impact factor: 1.826

9.  Age-related networks of regional covariance in MRI gray matter: reproducible multivariate patterns in healthy aging.

Authors:  Kaitlin L Bergfield; Krista D Hanson; Kewei Chen; Stefan J Teipel; Harald Hampel; Stanley I Rapoport; James R Moeller; Gene E Alexander
Journal:  Neuroimage       Date:  2009-09-28       Impact factor: 6.556

10.  Fast random permutation tests enable objective evaluation of methods for single-subject FMRI analysis.

Authors:  Anders Eklund; Mats Andersson; Hans Knutsson
Journal:  Int J Biomed Imaging       Date:  2011-10-23
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  2 in total

1.  BROCCOLI: Software for fast fMRI analysis on many-core CPUs and GPUs.

Authors:  Anders Eklund; Paul Dufort; Mattias Villani; Stephen Laconte
Journal:  Front Neuroinform       Date:  2014-03-14       Impact factor: 4.081

2.  Comparison of CPU and GPU bayesian estimates of fibre orientations from diffusion MRI.

Authors:  Danny H C Kim; Lynne J Williams; Moises Hernandez-Fernandez; Bruce H Bjornson
Journal:  PLoS One       Date:  2022-04-21       Impact factor: 3.240

  2 in total

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