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Literature DB >> 23624570

A beginner's guide to phylogenetics.

Abstract

Metagenomics and the development of high throughput next generation sequencing capabilities have forced significant development in the field of phylogenetics: the study of the evolutionary relatedness of the planet's inhabitants. Herein, I review the major tree-building strategies, challenges and opportunities which exist in this rapidly expanding field of evolutionary biology.

Mesh：

Year: 2013 PMID： 23624570 DOI： 10.1007/s00248-013-0236-x

Source DB: PubMed Journal: Microb Ecol ISSN： 0095-3628 Impact factor: 4.552

28 in total

Review 1. Global dinucleotide signatures and analysis of genomic heterogeneity.

Authors: S Karlin
Journal: Curr Opin Microbiol Date: 1998-10 Impact factor: 7.934

Review 2. The role of phylogenetics in comparative genetics.

Authors: Douglas E Soltis; Pamela S Soltis
Journal: Plant Physiol Date: 2003-08 Impact factor: 8.340

3. Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome.

Authors: Eamonn P Culligan; Roy D Sleator; Julian R Marchesi; Colin Hill
Journal: ISME J Date: 2012-04-26 Impact factor: 10.302

Review 4. Bacterial pathogenomics.

Authors: Mark J Pallen; Brendan W Wren
Journal: Nature Date: 2007-10-18 Impact factor: 49.962

Review 5. Statistical measures of uncertainty for branches in phylogenetic trees inferred from molecular sequences by using model-based methods.

Authors: Borys Wróbel
Journal: J Appl Genet Date: 2008 Impact factor: 3.240

Review 6. Molecular phylogeny: reconstructing the forest.

Authors: Philippe Lopez; Eric Bapteste
Journal: C R Biol Date: 2008-11-29 Impact factor: 1.583

Review 7. Statistics and truth in phylogenomics.

Authors: Sudhir Kumar; Alan J Filipski; Fabia U Battistuzzi; Sergei L Kosakovsky Pond; Koichiro Tamura
Journal: Mol Biol Evol Date: 2011-08-26 Impact factor: 16.240

8. Search for a 'Tree of Life' in the thicket of the phylogenetic forest.

Authors: Pere Puigbò; Yuri I Wolf; Eugene V Koonin
Journal: J Biol Date: 2009-07-13

Review 9. Human genetics and genomics a decade after the release of the draft sequence of the human genome.

Authors: Nasheen Naidoo; Yudi Pawitan; Richie Soong; David N Cooper; Chee-Seng Ku
Journal: Hum Genomics Date: 2011-10 Impact factor: 4.639

10. How Fitch-Margoliash Algorithm can Benefit from Multi Dimensional Scaling.

Authors: Sylvain Lespinats; Delphine Grando; Eric Maréchal; Mohamed-Ali Hakimi; Olivier Tenaillon; Olivier Bastien
Journal: Evol Bioinform Online Date: 2011-06-07 Impact factor: 1.625

6 in total

Review 1. Under the microscope: From pathogens to probiotics and back.

Authors: Roy D Sleator
Journal: Bioengineered Date: 2015 Impact factor: 3.269

2. Cyanobacterial phylogenetic analysis based on phylogenomics approaches render evolutionary diversification and adaptation: an overview of representative orders.

Authors: Ratna Prabha; Dhananjaya P Singh
Journal: 3 Biotech Date: 2019-02-15 Impact factor: 2.406

6. Metagenomic identification of a novel salt tolerance gene from the human gut microbiome which encodes a membrane protein with homology to a brp/blh-family β-carotene 15,15'-monooxygenase.

Authors: Eamonn P Culligan; Roy D Sleator; Julian R Marchesi; Colin Hill
Journal: PLoS One Date: 2014-07-24 Impact factor: 3.240