Literature DB >> 23616439

Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences.

Manal Kalkatawi, Farania Rangkuti, Michael Schramm, Boris R Jankovic, Allan Kamau, Rajesh Chowdhary, John A C Archer, Vladimir B Bajic.   

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Year:  2013        PMID： 23616439     DOI： 10.1093/bioinformatics/btt161

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


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  5 in total

1.  Omni-PolyA: a method and tool for accurate recognition of Poly(A) signals in human genomic DNA.

Authors:  Arturo Magana-Mora; Manal Kalkatawi; Vladimir B Bajic
Journal:  BMC Genomics       Date:  2017-08-15       Impact factor: 3.969

2.  Splice2Deep: An ensemble of deep convolutional neural networks for improved splice site prediction in genomic DNA.

Authors:  Somayah Albaradei; Arturo Magana-Mora; Maha Thafar; Mahmut Uludag; Vladimir B Bajic; Takashi Gojobori; Magbubah Essack; Boris R Jankovic
Journal:  Gene X       Date:  2020-05-13

3.  Aptardi predicts polyadenylation sites in sample-specific transcriptomes using high-throughput RNA sequencing and DNA sequence.

Authors:  Ryan Lusk; Evan Stene; Farnoush Banaei-Kashani; Boris Tabakoff; Katerina Kechris; Laura M Saba
Journal:  Nat Commun       Date:  2021-03-12       Impact factor: 14.919

4.  Poly(A) motif prediction using spectral latent features from human DNA sequences.

Authors:  Bo Xie; Boris R Jankovic; Vladimir B Bajic; Le Song; Xin Gao
Journal:  Bioinformatics       Date:  2013-07-01       Impact factor: 6.937

5.  Large-scale translatome profiling annotates the functional genome and reveals the key role of genic 3' untranslated regions in translatomic variation in plants.

Authors:  Wanchao Zhu; Jing Xu; Sijia Chen; Jian Chen; Yan Liang; Cuijie Zhang; Qing Li; Jinsheng Lai; Lin Li
Journal:  Plant Commun       Date:  2021-03-23
  5 in total

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