Literature DB >> 23616257

Whole-exome sequencing identifies novel LEPR mutations in individuals with severe early onset obesity.

Richard Gill1, Yee Him Cheung, Yufeng Shen, Patricia Lanzano, Nazrat M Mirza, Svetlana Ten, Noel K Maclaren, Roja Motaghedi, Joan C Han, Jack A Yanovski, Rudolph L Leibel, Wendy K Chung.   

Abstract

OBJECTIVE: Obesity is a major public health problem that increases the risk for a broad spectrum of co-morbid conditions. Despite evidence for a strong genetic contribution to susceptibility to obesity, previous efforts to discover the relevant genes using positional cloning have failed to account for most of the apparent genetic risk variance. DESIGN AND METHODS: Deploying a strategy combining analysis of exome sequencing data in extremely obese members of four consanguineous families with segregation analysis, we screened for causal genetic variants. Filter-based analysis and homozygosity mapping were used to identify and prioritize putative functional variants.
RESULTS: Two novel frameshift mutations in the leptin receptor in two of the families were identified.
CONCLUSIONS: These results provide proof-of-principle that whole-exome sequencing of families segregating for extreme obesity can identify causal pathogenic mutations. The methods described here can be extended to additional families segregating for extreme obesity and should enable the identification of mutations in novel genes that predispose to obesity.
Copyright © 2013 The Obesity Society.

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Year:  2013        PMID: 23616257      PMCID: PMC3791145          DOI: 10.1002/oby.20492

Source DB:  PubMed          Journal:  Obesity (Silver Spring)        ISSN: 1930-7381            Impact factor:   5.002


  32 in total

1.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

2.  Power in the phenotypic extremes: a simulation study of power in discovery and replication of rare variants.

Authors:  Lin T Guey; Jasmina Kravic; Olle Melander; Noël P Burtt; Jason M Laramie; Valeriya Lyssenko; Anna Jonsson; Eero Lindholm; Tiinamaija Tuomi; Bo Isomaa; Peter Nilsson; Peter Almgren; Sekar Kathiresan; Leif Groop; Albert B Seymour; David Altshuler; Benjamin F Voight
Journal:  Genet Epidemiol       Date:  2011-05       Impact factor: 2.135

3.  A leptin missense mutation associated with hypogonadism and morbid obesity.

Authors:  A Strobel; T Issad; L Camoin; M Ozata; A D Strosberg
Journal:  Nat Genet       Date:  1998-03       Impact factor: 38.330

4.  A twin study of human obesity.

Authors:  A J Stunkard; T T Foch; Z Hrubec
Journal:  JAMA       Date:  1986-07-04       Impact factor: 56.272

Review 5.  Clinical endocrinology of human leptin.

Authors:  L F Van Gaal; M A Wauters; I L Mertens; R V Considine; I H De Leeuw
Journal:  Int J Obes Relat Metab Disord       Date:  1999-02

6.  Towards a better prediction of peak concentration, volume of distribution and half-life after oral drug administration in man, using allometry.

Authors:  Vikash K Sinha; Karin Vaarties; Stefan S De Buck; Luca A Fenu; Marjoleen Nijsen; Ron A H J Gilissen; Wendy Sanderson; Kelly Van Uytsel; Eva Hoeben; Achiel Van Peer; Claire E Mackie; Johan W Smit
Journal:  Clin Pharmacokinet       Date:  2011-05       Impact factor: 6.447

Review 7.  The leptin receptor.

Authors:  L A Tartaglia
Journal:  J Biol Chem       Date:  1997-03-07       Impact factor: 5.157

8.  An adoption study of human obesity.

Authors:  A J Stunkard; T I Sørensen; C Hanis; T W Teasdale; R Chakraborty; W J Schull; F Schulsinger
Journal:  N Engl J Med       Date:  1986-01-23       Impact factor: 91.245

Review 9.  Unlocking Mendelian disease using exome sequencing.

Authors:  Christian Gilissen; Alexander Hoischen; Han G Brunner; Joris A Veltman
Journal:  Genome Biol       Date:  2011-09-14       Impact factor: 13.583

10.  Generation of soluble leptin receptor by ectodomain shedding of membrane-spanning receptors in vitro and in vivo.

Authors:  Hongfei Ge; Lu Huang; Tiffany Pourbahrami; Cai Li
Journal:  J Biol Chem       Date:  2002-09-20       Impact factor: 5.157

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  16 in total

Review 1.  Leptin applications in 2015: what have we learned about leptin and obesity?

Authors:  Olivia M Farr; Anna Gavrieli; Christos S Mantzoros
Journal:  Curr Opin Endocrinol Diabetes Obes       Date:  2015-10       Impact factor: 3.243

Review 2.  GENETIC AND EPIGENETIC CAUSES OF OBESITY.

Authors:  Vidhu V Thaker
Journal:  Adolesc Med State Art Rev       Date:  2017

3.  Differentiation of hypothalamic-like neurons from human pluripotent stem cells.

Authors:  Liheng Wang; Kana Meece; Damian J Williams; Kinyui Alice Lo; Matthew Zimmer; Garrett Heinrich; Jayne Martin Carli; Charles A Leduc; Lei Sun; Lori M Zeltser; Matthew Freeby; Robin Goland; Stephen H Tsang; Sharon L Wardlaw; Dieter Egli; Rudolph L Leibel
Journal:  J Clin Invest       Date:  2015-01-02       Impact factor: 14.808

Review 4.  Obesity Genomics and Metabolomics: a Nexus of Cardiometabolic Risk.

Authors:  Jessica A Regan; Svati H Shah
Journal:  Curr Cardiol Rep       Date:  2020-10-10       Impact factor: 2.931

5.  Exome sequencing followed by genotyping suggests SYPL2 as a susceptibility gene for morbid obesity.

Authors:  Hong Jiao; Peter Arner; Paul Gerdhem; Rona J Strawbridge; Erik Näslund; Anders Thorell; Anders Hamsten; Juha Kere; Ingrid Dahlman
Journal:  Eur J Hum Genet       Date:  2014-11-19       Impact factor: 4.246

6.  Whole exome sequencing of extreme morbid obesity patients: translational implications for obesity and related disorders.

Authors:  Gilberto Paz-Filho; Margaret C S Boguszewski; Claudio A Mastronardi; Hardip R Patel; Angad S Johar; Aaron Chuah; Gavin A Huttley; Cesar L Boguszewski; Ma-Li Wong; Mauricio Arcos-Burgos; Julio Licinio
Journal:  Genes (Basel)       Date:  2014-08-25       Impact factor: 4.096

Review 7.  Obesity genetics in mouse and human: back and forth, and back again.

Authors:  Fereshteh T Yazdi; Susanne M Clee; David Meyre
Journal:  PeerJ       Date:  2015-03-24       Impact factor: 2.984

Review 8.  Genetic strategies to understand physiological pathways regulating body weight.

Authors:  Sadaf Farooqi
Journal:  Mamm Genome       Date:  2014-08-26       Impact factor: 2.957

9.  Transcriptomic analysis of aggressive meningiomas identifies PTTG1 and LEPR as prognostic biomarkers independent of WHO grade.

Authors:  Melissa Schmidt; Andreas Mock; Christine Jungk; Felix Sahm; Anna Theresa Ull; Rolf Warta; Katrin Lamszus; Konstantinos Gousias; Ralf Ketter; Saskia Roesch; Carmen Rapp; Sebastian Schefzyk; Steffi Urbschat; Bernd Lahrmann; Almuth F Kessler; Mario Löhr; Christian Senft; Niels Grabe; David Reuss; Philipp Beckhove; Manfred Westphal; Andreas von Deimling; Andreas Unterberg; Matthias Simon; Christel Herold-Mende
Journal:  Oncotarget       Date:  2016-03-22

10.  Obesity: a gateway disease with a rising prevalence.

Authors:  Gema Frühbeck; Volkan Yumuk
Journal:  Obes Facts       Date:  2014-04-04       Impact factor: 3.942

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