Literature DB >> 23612597

When stable RNA becomes unstable: the degradation of ribosomes in bacteria and beyond.

Ülo Maiväli1, Anton Paier, Tanel Tenson.   

Abstract

This review takes a comparative look at the various scenarios where ribosomes are degraded in bacteria and eukaryotes with emphasis on studies involving Escherichia coli and Saccharomyces cerevisiae. While the molecular mechanisms of degradation in bacteria and yeast appear somewhat different, we argue that the underlying causes of ribosome degradation are remarkably similar. In both model organisms during ribosomal assembly, partially formed pre-ribosomal particles can be degraded by at least two different sequentially-acting quality control pathways and fully assembled but functionally faulty ribosomes can be degraded in a separate quality control pathway. In addition, ribosomes that are both structurally- and functionally-sound can be degraded as an adaptive measure to stress.

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Year:  2013        PMID: 23612597     DOI: 10.1515/hsz-2013-0133

Source DB:  PubMed          Journal:  Biol Chem        ISSN: 1431-6730            Impact factor:   3.915


  9 in total

Review 1.  Viral interference of the bacterial RNA metabolism machinery.

Authors:  Tom Dendooven; An Van den Bossche; Hanne Hendrix; Pieter-Jan Ceyssens; Marleen Voet; K J Bandyra; Marc De Maeyer; Abram Aertsen; Jean-Paul Noben; Steven W Hardwick; Ben F Luisi; Rob Lavigne
Journal:  RNA Biol       Date:  2016-11-11       Impact factor: 4.652

2.  Toxins MazF and MqsR cleave Escherichia coli rRNA precursors at multiple sites.

Authors:  Toomas Mets; Markus Lippus; David Schryer; Aivar Liiv; Villu Kasari; Anton Paier; Ülo Maiväli; Jaanus Remme; Tanel Tenson; Niilo Kaldalu
Journal:  RNA Biol       Date:  2016-11-18       Impact factor: 4.652

3.  Changes in Bacillus Spore Small Molecules, rRNA, Germination, and Outgrowth after Extended Sublethal Exposure to Various Temperatures: Evidence that Protein Synthesis Is Not Essential for Spore Germination.

Authors:  George Korza; Barbara Setlow; Lei Rao; Qiao Li; Peter Setlow
Journal:  J Bacteriol       Date:  2016-11-18       Impact factor: 3.490

4.  The effects of disruptions in ribosomal active sites and in intersubunit contacts on ribosomal degradation in Escherichia coli.

Authors:  Anton Paier; Margus Leppik; Aksel Soosaar; Tanel Tenson; Ülo Maiväli
Journal:  Sci Rep       Date:  2015-01-12       Impact factor: 4.379

5.  Elucidation of pathways of ribosomal RNA degradation: an essential role for RNase E.

Authors:  Shaheen Sulthana; Georgeta N Basturea; Murray P Deutscher
Journal:  RNA       Date:  2016-06-13       Impact factor: 4.942

6.  Simulated rRNA/DNA Ratios Show Potential To Misclassify Active Populations as Dormant.

Authors:  Blaire Steven; Cedar Hesse; John Soghigian; La Verne Gallegos-Graves; John Dunbar
Journal:  Appl Environ Microbiol       Date:  2017-05-17       Impact factor: 4.792

7.  A comparison of methods used to unveil the genetic and metabolic pool in the built environment.

Authors:  Cinta Gomez-Silvan; Marcus H Y Leung; Katherine A Grue; Randeep Kaur; Xinzhao Tong; Patrick K H Lee; Gary L Andersen
Journal:  Microbiome       Date:  2018-04-16       Impact factor: 14.650

8.  Experimental Genome-Wide Determination of RNA Polyadenylation in Chlamydomonas reinhardtii.

Authors:  Stephen A Bell; Chi Shen; Alishea Brown; Arthur G Hunt
Journal:  PLoS One       Date:  2016-01-05       Impact factor: 3.240

9.  Hibernation-Promoting Factor Sequesters Staphylococcus aureus Ribosomes to Antagonize RNase R-Mediated Nucleolytic Degradation.

Authors:  Anna Lipońska; Mee-Ngan F Yap
Journal:  mBio       Date:  2021-07-13       Impact factor: 7.867

  9 in total

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