| Literature DB >> 23610623 |
Claudia Melis1, Asa Alexandra Borg, Henrik Jensen, Eirin Bjørkvoll, Thor H Ringsby, Bernt-Erik Sæther.
Abstract
Water vole Arvicola amphibius populations have recently experienced severe decline in several European countries as a consequence of both reduction in suitable habitat and the establishment of the alien predator American mink Neovison vison. We used DNA microsatellite markers to describe the genetic structure of 14 island populations of water vole off the coast of northern Norway. We looked at intra- and inter-population levels of genetic variation and examined the effect of distance among pairs of populations on genetic differentiation (isolation by distance). We found a high level of genetic differentiation (measured by F ST) among populations overall as well as between all pairs of populations. The genetic differentiation between populations was positively correlated with geographic distance between them. A clustering analysis grouped individuals into 7 distinct clusters and showed the presence of 3 immigrants among them. Our results suggest a small geographic scale for evolutionary and population dynamic processes in our water vole populations.Entities:
Keywords: Dispersal; genetic structure; isolation by distance; microsatellite; patchy habitat
Year: 2013 PMID: 23610623 PMCID: PMC3631393 DOI: 10.1002/ece3.499
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1Adult individual of water vole marked at Sleneset (northern Norway).
Figure 2Study area at the coast of northern Norway where the genetic structure of water vole was investigated in 2006. The sampled island populations are indicated by numbers (1–14) and the localities by letters (a: Myken; b: Lovund; c: Sleneset; d: Lånan). The scale bar at the bottom refers to the scale in maps showing details of the 4 localities.
Sampling localities, geographic coordinates of the islands, island area, N number of individual water voles sampled and genotyped at 13 microsatellite loci in each population in northern Norway, and basic population-level statistics of genetic variability: N sample size, Ncmr mean population size estimated by capture-mark-recapture methods. AR allelic richness corrected for minimum sample size, HO observed heterozygosity, HE expected heterozygosity, FIS inbreeding coefficient, HW level of significance (Bonferroni-adjusted 5% level of significance: P = 0.0036, significant values in bold) for test of deviance from Hardy–Weinberg equilibrium across all loci. None of the FIS was significantly different from zero when correcting the P value for the number of simultaneous tests (adjusted 5% level of significance: P = 0.0003)
| Locality | Island nr. | North | East | Area (m2) | HW | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Myken | 1 | 66.770 | 12.475 | 35000 | 15 | 30 | 1.305 | 0.164 | 0.129 | −0.280 | 0.492 |
| Lovund | 2 | 66.376 | 12.368 | 18100 | 7 | 7 | 2.119 | 0.571 | 0.450 | −0.300 | 0.977 |
| 3 | 66.377 | 12.382 | 6550 | 5 | 6 | 1.540 | 0.369 | 0.253 | −0.548 | 0.538 | |
| 4 | 66.377 | 12.381 | 7050 | 4 | - | 1.632 | 0.374 | 0.252 | −0.416 | 0.990 | |
| 5 | 66.373 | 12.359 | 12330 | 52 | 53 | 2.234 | 0.463 | 0.486 | 0.046 | ||
| Sleneset | 6 | 66.324 | 12.520 | 11800 | 8 | 9 | 2.314 | 0.442 | 0.485 | 0.094 | 0.792 |
| 7 | 66.335 | 12.541 | 9150 | 6 | - | 2.234 | 0.577 | 0.484 | −0.216 | 1.000 | |
| 8 | 66.334 | 12.617 | 19900 | 4 | 5 | 1.684 | 0.308 | 0.272 | −0.157 | 0.986 | |
| 9 | 66.332 | 12.613 | 34900 | 115 | 115 | 1.922 | 0.384 | 0.387 | 0.007 | 0.019 | |
| 10 | 66.351 | 12.632 | 15200 | 76 | 85 | 2.002 | 0.418 | 0.412 | −0.013 | 0.240 | |
| Lånan | 11 | 65.884 | 11.830 | 8350 | 4 | - | 1.283 | 0.153 | 0.115 | −0.412 | 0.879 |
| 12 | 65.864 | 11.820 | 8370 | 17 | 18 | 1.572 | 0.236 | 0.220 | −0.071 | 0.718 | |
| 13 | 65.878 | 11.813 | 10150 | 7 | - | 1.410 | 0.132 | 0.177 | 0.273 | 0.480 | |
| 14 | 65.877 | 11.809 | 2350 | 3 | 3 | 1.769 | 0.256 | 0.261 | 0.024 | 1.000 | |
| Total | 323 |
Too large confidence intervals.
Descriptive statistics of the 13 microsatellites used in 14 water vole populations in northern Norway when individuals from all populations where pooled; N number of individuals genotyped, NA number of alleles, HO mean observed heterozygosity, HE mean expected heterozygosity, HW level of significance (P) for test of deviance from Hardy–Weinberg equilibrium
| Locus | HW | ||||
|---|---|---|---|---|---|
| AV10 | 322 | 8 | 0.438 | 0.629 | 0.000 |
| AV8 | 322 | 6 | 0.525 | 0.721 | 0.000 |
| AV9 | 322 | 6 | 0.161 | 0.329 | 0.000 |
| AV11 | 320 | 13 | 0.606 | 0.726 | 0.000 |
| AV12 | 322 | 8 | 0.488 | 0.687 | 0.000 |
| AV14 | 322 | 7 | 0.565 | 0.668 | 0.000 |
| AV3 | 322 | 6 | 0.494 | 0.773 | 0.000 |
| AT24 | 322 | 2 | 0.258 | 0.385 | 0.000 |
| AT2 | 322 | 4 | 0.382 | 0.647 | 0.000 |
| AT13 | 322 | 6 | 0.277 | 0.620 | 0.000 |
| AT22 | 322 | 3 | 0.311 | 0.489 | 0.000 |
| AT9 | 321 | 6 | 0.268 | 0.301 | 0.000 |
| AT25 | 322 | 5 | 0.220 | 0.509 | 0.000 |
Figure 3Isolation-by-distance analysis for water vole populations in northern Norway. The graph shows genetic distance (FST* = FST/(1−FST)) based on 13 microsatellite loci versus log-transformed geographic distance (kilometers) for all possible pairwise combinations among 14 water vole populations at the coast of northern Norway (2006).
Figure 4Results of Bayesian clustering of 323 water voles from 14 island populations within 4 localities in northern Norway with the program STRUCTURE. Population assignment to seven clusters is shown as colors on the bars representing the individuals. Numbers refer to the sampled islands in Table 1 and Fig. 2.
| Island nr. | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.19 | 44.11 | 44.08 | 44.59 | 49.88 | 48.71 | 49.17 | 49.32 | 47.31 | 102.84 | 105.41 | 103.93 | 104.03 | |
| 2 | 0.69 | 0.60 | 0.50 | 0.57 | 8.97 | 9.05 | 12.13 | 12.01 | 12.16 | 59.91 | 62.42 | 61.06 | 61.18 | |
| 3 | 0.78 | 0.29 | 0.11 | 1.11 | 8.54 | 8.56 | 11.59 | 11.48 | 11.58 | 60.19 | 62.69 | 61.33 | 61.46 | |
| 4 | 0.77 | 0.27 | 0.40 | 1.03 | 8.64 | 8.66 | 11.70 | 11.59 | 11.69 | 60.18 | 62.68 | 61.32 | 61.45 | |
| 5 | 0.53 | 0.23 | 0.32 | 0.27 | 9.09 | 9.27 | 12.41 | 12.28 | 12.52 | 59.42 | 61.93 | 60.56 | 60.68 | |
| 6 | 0.59 | 0.30 | 0.45 | 0.36 | 0.31 | 1.58 | 4.52 | 4.27 | 5.92 | 57.95 | 60.34 | 59.12 | 59.26 | |
| 7 | 0.68 | 0.20 | 0.42 | 0.24 | 0.22 | 0.15 | 3.39 | 3.19 | 4.47 | 59.52 | 61.91 | 60.69 | 60.84 | |
| 8 | 0.76 | 0.41 | 0.62 | 0.48 | 0.31 | 0.20 | 0.21 | 0.28 | 2.09 | 61.31 | 63.65 | 62.49 | 62.64 | |
| 9 | 0.58 | 0.24 | 0.38 | 0.26 | 0.28 | 0.23 | 0.06 | 0.19 | 2.34 | 61.04 | 63.38 | 62.22 | 62.37 | |
| 10 | 0.56 | 0.24 | 0.40 | 0.36 | 0.30 | 0.19 | 0.12 | 0.28 | 0.14 | 63.32 | 65.67 | 64.50 | 64.65 | |
| 11 | 0.84 | 0.66 | 0.80 | 0.77 | 0.52 | 0.55 | 0.61 | 0.77 | 0.60 | 0.56 | 2.58 | 1.18 | 1.34 | |
| 12 | 0.76 | 0.67 | 0.74 | 0.72 | 0.52 | 0.57 | 0.62 | 0.71 | 0.60 | 0.56 | 0.32 | 1.65 | 1.65 | |
| 13 | 0.79 | 0.67 | 0.76 | 0.73 | 0.51 | 0.54 | 0.61 | 0.74 | 0.60 | 0.56 | 0.38 | 0.19 | 0.20 | |
| 14 | 0.78 | 0.59 | 0.72 | 0.68 | 0.47 | 0.45 | 0.52 | 0.67 | 0.57 | 0.53 | 0.29 | 0.05 | 0.06 |