Literature DB >> 23603966

Characterization of a nitrate-inducible transcriptional repressor NIGT1 provides new insights into DNA recognition by the GARP family proteins.

Shuichi Yanagisawa1.   

Abstract

The GARP domain is a single Myb-related DNA-binding domain found in plant transcription factors. Proteins containing the GARP domain (GARP family proteins) are suggested to be involved in the regulation of various physiological processes through their interactions with ostensibly different DNA sequences. Our recent study on a nitrate-inducible gene encoding a GARP family protein, referred to as NIGT1 (Nitrate-Inducible, GARP-type Transcriptional Repressor 1), not only suggests a previously unidentified role for the GARP family proteins in higher plants but also provides a hypothesis for why NIGT1 can show dual specificity on DNA binding and why respective GARP family proteins can recognize very different DNA sequences.

Entities:  

Keywords:  DNA binding specificity; GARP transcription factor; dual DNA recognition; nitrate induction

Mesh：

Substances：

Year:  2013        PMID： 23603966      PMCID： PMC3909032          DOI： 10.4161/psb.24447

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN： 1559-2316


  11 in total

1.  Transcription factor families in Arabidopsis: major progress and outstanding issues for future research.

Authors:  Li-Jia Qu; Yu-Xian Zhu
Journal:  Curr Opin Plant Biol       Date:  2006-07-31       Impact factor: 7.834

2.  GLK transcription factors regulate chloroplast development in a cell-autonomous manner.

Authors:  Mark T Waters; Elizabeth C Moylan; Jane A Langdale
Journal:  Plant J       Date:  2008-08-04       Impact factor: 6.417

3.  GOLDEN 2: a novel transcriptional regulator of cellular differentiation in the maize leaf.

Authors:  L N Hall; L Rossini; L Cribb; J A Langdale
Journal:  Plant Cell       Date:  1998-06       Impact factor: 11.277

4.  Psr1, a nuclear localized protein that regulates phosphorus metabolism in Chlamydomonas.

Authors:  D D Wykoff; A R Grossman; D P Weeks; H Usuda; K Shimogawara
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

5.  Compilation and characterization of Arabidopsis thaliana response regulators implicated in His-Asp phosphorelay signal transduction.

Authors:  A Imamura; N Hanaki; A Nakamura; T Suzuki; M Taniguchi; T Kiba; C Ueguchi; T Sugiyama; T Mizuno
Journal:  Plant Cell Physiol       Date:  1999-07       Impact factor: 4.927

6.  PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis circadian clock.

Authors:  Kiyoshi Onai; Masahiro Ishiura
Journal:  Genes Cells       Date:  2005-10       Impact factor: 1.891

7.  Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.

Authors:  J L Riechmann; J Heard; G Martin; L Reuber; C Jiang; J Keddie; L Adam; O Pineda; O J Ratcliffe; R R Samaha; R Creelman; M Pilgrim; P Broun; J Z Zhang; D Ghandehari; B K Sherman; G Yu
Journal:  Science       Date:  2000-12-15       Impact factor: 47.728

8.  A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae.

Authors:  V Rubio; F Linhares; R Solano; A C Martín; J Iglesias; A Leyva; J Paz-Ares
Journal:  Genes Dev       Date:  2001-08-15       Impact factor: 11.361

9.  A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.

Authors:  Naoya Sawaki; Ryoma Tsujimoto; Mikao Shigyo; Mineko Konishi; Seiichi Toki; Toru Fujiwara; Shuichi Yanagisawa
Journal:  Plant Cell Physiol       Date:  2013-01-16       Impact factor: 4.927

10.  GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis.

Authors:  Mark T Waters; Peng Wang; Muris Korkaric; Richard G Capper; Nigel J Saunders; Jane A Langdale
Journal:  Plant Cell       Date:  2009-04-17       Impact factor: 11.277
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  6 in total

1.  Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and growth in plants.

Authors:  Meina Guo; Yuxin Zhang; Xianqing Jia; Xueqing Wang; Yibo Zhang; Jifeng Liu; Qingshen Yang; Wenyuan Ruan; Keke Yi
Journal:  Plant Cell       Date:  2022-08-25       Impact factor: 12.085

2.  NIGT1 family proteins exhibit dual mode DNA recognition to regulate nutrient response-associated genes in Arabidopsis.

Authors:  Yoshiaki Ueda; Shohei Nosaki; Yasuhito Sakuraba; Takuya Miyakawa; Takatoshi Kiba; Masaru Tanokura; Shuichi Yanagisawa
Journal:  PLoS Genet       Date:  2020-11-02       Impact factor: 5.917

3.  The Dynamics of NO3- and NH4+ Uptake in Duckweed Are Coordinated with the Expression of Major Nitrogen Assimilation Genes.

Authors:  Yuzhen Zhou; Olena Kishchenko; Anton Stepanenko; Guimin Chen; Wei Wang; Jie Zhou; Chaozhi Pan; Nikolai Borisjuk
Journal:  Plants (Basel)       Date:  2021-12-21

4.  The apple GARP family gene MdHHO3 regulates the nitrate response and leaf senescence.

Authors:  Binbin Wen; Xingyao Gong; Wenpeng Deng; Xiude Chen; Dongmei Li; Xiling Fu; Ling Li; Qiuping Tan
Journal:  Front Plant Sci       Date:  2022-08-09       Impact factor: 6.627

5.  Differential transcriptome profiling of chilling stress response between shoots and rhizomes of Oryza longistaminata using RNA sequencing.

Authors:  Ting Zhang; Liyu Huang; Yinxiao Wang; Wensheng Wang; Xiuqin Zhao; Shilai Zhang; Jing Zhang; Fengyi Hu; Binying Fu; Zhikang Li
Journal:  PLoS One       Date:  2017-11-30       Impact factor: 3.240

6.  A NIGT1-centred transcriptional cascade regulates nitrate signalling and incorporates phosphorus starvation signals in Arabidopsis.

Authors:  Yoshie Maeda; Mineko Konishi; Takatoshi Kiba; Yasuhito Sakuraba; Naoya Sawaki; Tomohiro Kurai; Yoshiaki Ueda; Hitoshi Sakakibara; Shuichi Yanagisawa
Journal:  Nat Commun       Date:  2018-04-10       Impact factor: 14.919
  6 in total

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