Literature DB >> 23598437

A relativistic DFT methodology for calculating the structures and NMR chemical shifts of octahedral platinum and iridium complexes.

Jan Vícha1, Michael Patzschke, Radek Marek.   

Abstract

A methodology for optimizing the geometry and calculating the NMR shielding constants is calibrated for octahedral complexes of Pt(IV) and Ir(III) with modified nucleic acid bases. The performance of seven different functionals (BLYP, B3LYP, BHLYP, BP86, TPSS, PBE, and PBE0) in optimizing the geometry of transition-metal complexes is evaluated using supramolecular clusters derived from X-ray data. The effects of the size of the basis set (ranging from SVP to QZVPP) and the dispersion correction (D3) on the interatomic distances are analyzed. When structural deviations and computational demands are employed as criteria for evaluating the optimizations of these clusters, the PBE0/def2-TZVPP/D3 approach provides excellent results. In the next step, the PBE0/def2-TZVPP approach is used with the continuum-like screening model (COSMO) to optimize the geometry of single molecules for the subsequent calculation of the NMR shielding constants in solution. The two-component zeroth-order regular approximation (SO-ZORA) is used to calculate the NMR shielding constants (PBE0/TZP/COSMO). The amount of exact exchange in the PBE0 functional is validated for the nuclear magnetic shieldings of atoms in the vicinity of heavy transition metals. For the PBE0/TZP/COSMO setup, an exact exchange of 40% is found to accurately reproduce the experimental NMR shielding constants for both types of complexes. Finally, the effect of the amount of exact exchange on the NMR shielding calculations (which is capable of compensating for the structural deficiencies) is analyzed for various molecular geometries (SCS-MP2, BHLYP, and PBE0) and the influence of a trans-substituent on the NMR chemical shift of nitrogen is discussed. The observed dependencies for an iridium complex cannot be rationalized by visualizing the Fermi-contact (FC) induced spin density and probably originate from changes in the d-d transitions that modulate the spin-orbit (SO) part of the SO/FC term.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23598437     DOI: 10.1039/c3cp44440f

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  6 in total

1.  Direct Evidence for the Origin of Bis-Gold Intermediates: Probing Gold Catalysis with Mass Spectrometry.

Authors:  Mei Lu; Yijin Su; Pengyi Zhao; Xiaohan Ye; Yi Cai; Xiaodong Shi; Eric Masson; Fengyao Li; J Larry Campbell; Hao Chen
Journal:  Chemistry       Date:  2018-01-17       Impact factor: 5.236

2.  Quantum chemical calculations of 31P NMR chemical shifts of P-donor ligands in platinum(II) complexes.

Authors:  Martin Sojka; Marek Nečas; Jaromir Toušek
Journal:  J Mol Model       Date:  2019-10-28       Impact factor: 1.810

3.  1H and 195Pt NMR prediction for inclusion compounds formed by cisplatin and oxidized carbon nanostructures.

Authors:  Leonardo A De Souza; Eduardo R Almeida; Joyce H Cunha E Silva; Diego F S Paschoal; Jadson C Belchior; Hélio F Dos Santos; Wagner B De Almeida
Journal:  RSC Adv       Date:  2020-12-24       Impact factor: 3.361

4.  Relativistic DFT Calculations of Hyperfine Coupling Constants in 5d Hexafluorido Complexes: [ReF6 ]2- and [IrF6 ]2.

Authors:  Pi A B Haase; Michal Repisky; Stanislav Komorovsky; Jesper Bendix; Stephan P A Sauer
Journal:  Chemistry       Date:  2017-12-04       Impact factor: 5.236

5.  Spectroscopic and Computational Evidence of Intramolecular AuI ⋅⋅⋅H+ -N Hydrogen Bonding.

Authors:  Michal Straka; Erik Andris; Jan Vícha; Aleš Růžička; Jana Roithová; Lubomír Rulíšek
Journal:  Angew Chem Int Ed Engl       Date:  2019-01-18       Impact factor: 15.336

6.  Accurate X-ray Absorption Spectra near L- and M-Edges from Relativistic Four-Component Damped Response Time-Dependent Density Functional Theory.

Authors:  Lukas Konecny; Jan Vicha; Stanislav Komorovsky; Kenneth Ruud; Michal Repisky
Journal:  Inorg Chem       Date:  2021-12-27       Impact factor: 5.165

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.