Literature DB >> 23597923

A simple, universal, efficient PCR-based gene synthesis method: sequential OE-PCR gene synthesis.

Pingping Zhang1, Yingying Ding, Wenting Liao, Qiuli Chen, Huaqun Zhang, Peipei Qi, Ting He, Jinhong Wang, Songhua Deng, Tianyue Pan, Hao Ren, Wei Pan.   

Abstract

Herein we present a simple, universal, efficient gene synthesis method based on sequential overlap extension polymerase chain reactions (OE-PCRs). This method involves four key steps: (i) the design of paired complementary 54-mer oligonucleotides with 18 bp overlaps, (ii) the utilisation of sequential OE-PCR to synthesise full-length genes, (iii) the cloning and sequencing of four positive T-clones of the synthesised genes and (iv) the resynthesis of target genes by OE-PCR with correct templates. Mispriming and secondary structure were found to be the principal obstacles preventing successful gene synthesis and were easily identified and solved in this method. Compensating for the disadvantages of being laborious and time-consuming, this method has many attractive advantages, such as the ability to guarantee successful gene synthesis in most cases and good allowance for Taq polymerase, oligonucleotides, PCR conditions and a high error rate. Thus, this method provides an alternative tool for individual gene synthesis without strict needs of the high-specialised experience.
Copyright © 2013 Elsevier B.V. All rights reserved.

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Year:  2013        PMID: 23597923     DOI: 10.1016/j.gene.2013.03.126

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  6 in total

1.  Characterization of the antibody response against EV71 capsid proteins in Chinese individuals by NEIBM-ELISA.

Authors:  Yingying Ding; Xuguang Chen; Baohua Qian; Guorong Wu; Ting He; Jiaojiao Feng; Caixia Gao; Lili Wang; Jinhong Wang; Xiangyu Li; Mingmei Cao; Heng Peng; Chunyan Zhao; Wei Pan
Journal:  Sci Rep       Date:  2015-05-29       Impact factor: 4.379

2.  Serological detection and analysis of anti-VP1 responses against various enteroviruses (EV) (EV-A, EV-B and EV-C) in Chinese individuals.

Authors:  Caixia Gao; Yingying Ding; Peng Zhou; Jiaojiao Feng; Baohua Qian; Ziyu Lin; Lili Wang; Jinhong Wang; Chunyan Zhao; Xiangyu Li; Mingmei Cao; Heng Peng; Bing Rui; Wei Pan
Journal:  Sci Rep       Date:  2016-02-26       Impact factor: 4.379

3.  Novel synthetic nucleotides of notifiable dengue (1-4), Japanese encephalitis, yellow fever and Zika flaviviruses.

Authors:  Gerry Amor Camer; Yuki Oikawa; Hitomi Omaki; Daiji Endoh
Journal:  Future Sci OA       Date:  2018-11-13

4.  Different Antibody Response against the Coxsackievirus A16 VP1 Capsid Protein: Specific or Non-Specific.

Authors:  Yingying Ding; Zhihong Wang; Xi Zhang; Zheng Teng; Caixia Gao; Baohua Qian; Lili Wang; Jiaojiao Feng; Jinhong Wang; Chunyan Zhao; Cunjiu Guo; Wei Pan
Journal:  PLoS One       Date:  2016-09-13       Impact factor: 3.240

5.  Non-neutralizing Antibody Responses against VP1 in Enterovirus A, B, C and Rhinovirus A species among Infants and Children in Shanghai.

Authors:  Yingying Ding; Bing Rui; Caixia Gao; Menghua Xu; Lili Wang; Chunyan Zhao; Jie Bai; Jinhong Wang; Jin Xu; Wei Pan
Journal:  Sci Rep       Date:  2018-04-03       Impact factor: 4.379

6.  Characterization of antibody response against 16kD and 38kD of M. tuberculosis in the assisted diagnosis of active pulmonary tuberculosis.

Authors:  Xiaohui Hao; Jie Bai; Yingying Ding; Jinhong Wang; Yidian Liu; Lan Yao; Wei Pan
Journal:  Ann Transl Med       Date:  2020-08
  6 in total

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