Literature DB >> 23597155

Transcription factories: genome organization and gene regulation.

Argyris Papantonis1, Peter R Cook.   

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Year:  2013        PMID： 23597155     DOI： 10.1021/cr300513p

Source DB:  PubMed          Journal:  Chem Rev        ISSN： 0009-2665            Impact factor:   60.622


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  105 in total

1.  Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization.

Authors:  Dianbo Liu; Jose Davila-Velderrain; Zhizhuo Zhang; Manolis Kellis
Journal:  Nucleic Acids Res       Date:  2019-08-22       Impact factor: 16.971

2.  Spatial organization of RNA polymerase II inside a mammalian cell nucleus revealed by reflected light-sheet superresolution microscopy.

Authors:  Ziqing W Zhao; Rahul Roy; J Christof M Gebhardt; David M Suter; Alec R Chapman; X Sunney Xie
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-30       Impact factor: 11.205

3.  Isolation of the protein and RNA content of active sites of transcription from mammalian cells.

Authors:  Svitlana Melnik; Maïwen Caudron-Herger; Lilija Brant; Ian M Carr; Karsten Rippe; Peter R Cook; Argyris Papantonis
Journal:  Nat Protoc       Date:  2016-02-25       Impact factor: 13.491

Review 4.  Viewing Nuclear Architecture through the Eyes of Nocturnal Mammals.

Authors:  Yana Feodorova; Martin Falk; Leonid A Mirny; Irina Solovei
Journal:  Trends Cell Biol       Date:  2020-01-22       Impact factor: 20.808

Review 5.  The interplay between nucleoid organization and transcription in archaeal genomes.

Authors:  Eveline Peeters; Rosalie P C Driessen; Finn Werner; Remus T Dame
Journal:  Nat Rev Microbiol       Date:  2015-05-06       Impact factor: 60.633

6.  Form and function of topologically associating genomic domains in budding yeast.

Authors:  Umut Eser; Devon Chandler-Brown; Ferhat Ay; Aaron F Straight; Zhijun Duan; William Stafford Noble; Jan M Skotheim
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-27       Impact factor: 11.205

7.  Ephemeral Protein Binding to DNA Shapes Stable Nuclear Bodies and Chromatin Domains.

Authors:  Chris A Brackley; Benno Liebchen; Davide Michieletto; Francois Mouvet; Peter R Cook; Davide Marenduzzo
Journal:  Biophys J       Date:  2017-03-28       Impact factor: 4.033

8.  Retrieving Chromatin Patterns from Deep Sequencing Data Using Correlation Functions.

Authors:  Jana Molitor; Jan-Philipp Mallm; Karsten Rippe; Fabian Erdel
Journal:  Biophys J       Date:  2017-01-26       Impact factor: 4.033

9.  Simulating topological domains in human chromosomes with a fitting-free model.

Authors:  C A Brackley; D Michieletto; F Mouvet; J Johnson; S Kelly; P R Cook; D Marenduzzo
Journal:  Nucleus       Date:  2016-09-02       Impact factor: 4.197

Review 10.  Controlling gene expression by DNA mechanics: emerging insights and challenges.

Authors:  David Levens; Laura Baranello; Fedor Kouzine
Journal:  Biophys Rev       Date:  2016-11-14
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