Literature DB >> 23595508

ENTROPY BASED DTI QUALITY CONTROL VIA REGIONAL ORIENTATION DISTRIBUTION.

M Farzinfar1, C Dietrich, Rg Smith, Y Li, A Gupta, Z Liu, Ma Styner.   

Abstract

Diffusion Tensor Imaging (DTI) has received increasing attention in the neuroimaging community. However, the complex Diffusion Weighted Images (DWI) acquisition protocol are prone to artifacts induced by motion and low signal-to-noise rations(SNRs). A rigorous quality control (QC) and error correction procedure is absolutely necessary for DTI data analysis. Most existing QC procedures are conducted in the DWI domain and/or on a voxel level, but our own experiments show that these methods often do not fully detect and eliminate certain types of artifacts. We propose a new regional, alignment-independent DTI-QC measure that is based in the DTI domain employing the entropy of the regional distribution of the principal directions. This new QC measurement is intended to complement the existing set of QC procedures by detecting and correcting residual artifacts. Experiments show that our automatic method can reliably detect and potentially correct such residual artifacts. The results indicate its usefulness for general quality assessment in DTI studies.

Entities:  

Year:  2012        PMID: 23595508      PMCID: PMC3625986          DOI: 10.1109/isbi.2012.6235474

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  12 in total

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2.  A constrained variational principle for direct estimation and smoothing of the diffusion tensor field from complex DWI.

Authors:  Zhizhou Wang; Baba C Vemuri; Yunmei Chen; Thomas H Mareci
Journal:  IEEE Trans Med Imaging       Date:  2004-08       Impact factor: 10.048

3.  Whole brain-based analysis of regional white matter tract alterations in rare motor neuron diseases by diffusion tensor imaging.

Authors:  Alexander Unrath; Hans-Peter Müller; Axel Riecker; Albert C Ludolph; Anne-Dorte Sperfeld; Jan Kassubek
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4.  Clinical DT-MRI estimation, smoothing, and fiber tracking with log-Euclidean metrics.

Authors:  Pierre Fillard; Xavier Pennec; Vincent Arsigny; Nicholas Ayache
Journal:  IEEE Trans Med Imaging       Date:  2007-11       Impact factor: 10.048

5.  Gender differences and age-related white matter changes of the human brain: a diffusion tensor imaging study.

Authors:  Jung-Lung Hsu; Alexander Leemans; Chyi-Huey Bai; Cheng-Hui Lee; Yuh-Feng Tsai; Hou-Chang Chiu; Wei-Hung Chen
Journal:  Neuroimage       Date:  2007-09-20       Impact factor: 6.556

6.  Quality Control of Diffusion Weighted Images.

Authors:  Zhexing Liu; Yi Wang; Guido Gerig; Sylvain Gouttard; Ran Tao; Thomas Fletcher; Martin Styner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2010-03-11

7.  Differences in white matter fiber tract development present from 6 to 24 months in infants with autism.

Authors:  Jason J Wolff; Hongbin Gu; Guido Gerig; Jed T Elison; Martin Styner; Sylvain Gouttard; Kelly N Botteron; Stephen R Dager; Geraldine Dawson; Annette M Estes; Alan C Evans; Heather C Hazlett; Penelope Kostopoulos; Robert C McKinstry; Sarah J Paterson; Robert T Schultz; Lonnie Zwaigenbaum; Joseph Piven
Journal:  Am J Psychiatry       Date:  2012-06       Impact factor: 18.112

8.  Estimation of the effective self-diffusion tensor from the NMR spin echo.

Authors:  P J Basser; J Mattiello; D LeBihan
Journal:  J Magn Reson B       Date:  1994-03

9.  Orientation entropy analysis of diffusion tensor in healthy and myelopathic spinal cord.

Authors:  Jiao-Long Cui; Chun-Yi Wen; Yong Hu; Kin-Cheung Mak; Ka-Hung Henry Mak; Keith Dip-Kei Luk
Journal:  Neuroimage       Date:  2011-07-18       Impact factor: 6.556

10.  Group analysis of DTI fiber tract statistics with application to neurodevelopment.

Authors:  Casey B Goodlett; P Thomas Fletcher; John H Gilmore; Guido Gerig
Journal:  Neuroimage       Date:  2008-11-14       Impact factor: 6.556

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  5 in total

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Journal:  Proc SPIE Int Soc Opt Eng       Date:  2013-03-13

2.  A high resolution 7-Tesla resting-state fMRI test-retest dataset with cognitive and physiological measures.

Authors:  Krzysztof J Gorgolewski; Natacha Mendes; Domenica Wilfling; Elisabeth Wladimirow; Claudine J Gauthier; Tyler Bonnen; Florence J M Ruby; Robert Trampel; Pierre-Louis Bazin; Roberto Cozatl; Jonathan Smallwood; Daniel S Margulies
Journal:  Sci Data       Date:  2015-01-20       Impact factor: 6.444

3.  An open science resource for establishing reliability and reproducibility in functional connectomics.

Authors:  Xi-Nian Zuo; Jeffrey S Anderson; Pierre Bellec; Rasmus M Birn; Bharat B Biswal; Janusch Blautzik; John C S Breitner; Randy L Buckner; Vince D Calhoun; F Xavier Castellanos; Antao Chen; Bing Chen; Jiangtao Chen; Xu Chen; Stanley J Colcombe; William Courtney; R Cameron Craddock; Adriana Di Martino; Hao-Ming Dong; Xiaolan Fu; Qiyong Gong; Krzysztof J Gorgolewski; Ying Han; Ye He; Yong He; Erica Ho; Avram Holmes; Xiao-Hui Hou; Jeremy Huckins; Tianzi Jiang; Yi Jiang; William Kelley; Clare Kelly; Margaret King; Stephen M LaConte; Janet E Lainhart; Xu Lei; Hui-Jie Li; Kaiming Li; Kuncheng Li; Qixiang Lin; Dongqiang Liu; Jia Liu; Xun Liu; Yijun Liu; Guangming Lu; Jie Lu; Beatriz Luna; Jing Luo; Daniel Lurie; Ying Mao; Daniel S Margulies; Andrew R Mayer; Thomas Meindl; Mary E Meyerand; Weizhi Nan; Jared A Nielsen; David O'Connor; David Paulsen; Vivek Prabhakaran; Zhigang Qi; Jiang Qiu; Chunhong Shao; Zarrar Shehzad; Weijun Tang; Arno Villringer; Huiling Wang; Kai Wang; Dongtao Wei; Gao-Xia Wei; Xu-Chu Weng; Xuehai Wu; Ting Xu; Ning Yang; Zhi Yang; Yu-Feng Zang; Lei Zhang; Qinglin Zhang; Zhe Zhang; Zhiqiang Zhang; Ke Zhao; Zonglei Zhen; Yuan Zhou; Xing-Ting Zhu; Michael P Milham
Journal:  Sci Data       Date:  2014-12-09       Impact factor: 6.444

4.  DTIPrep: quality control of diffusion-weighted images.

Authors:  Ipek Oguz; Mahshid Farzinfar; Joy Matsui; Francois Budin; Zhexing Liu; Guido Gerig; Hans J Johnson; Martin Styner
Journal:  Front Neuroinform       Date:  2014-01-30       Impact factor: 4.081

5.  A connectivity-based test-retest dataset of multi-modal magnetic resonance imaging in young healthy adults.

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  5 in total

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