| Literature DB >> 23593184 |
Ziarih Hawi1, Natasha Matthews, Joseph Wagner, Robyn H Wallace, Tim J Butler, Alasdair Vance, Lindsey Kent, Michael Gill, Mark A Bellgrove.
Abstract
BACKGROUND: The Coloboma mouse carries a ∼2 cM deletion encompassing the SNAP25 gene and has a hyperactive phenotype similar to that of ADHD. Such mice are 3 fold more active compared to their control littermates. Genetic association studies support a role for allelic variants of the human SNAP25 gene in predisposing to ADHD. METHODS/PRINCIPALEntities:
Mesh:
Substances:
Year: 2013 PMID: 23593184 PMCID: PMC3625226 DOI: 10.1371/journal.pone.0060274
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
TDT analysis of SNAP25 polymorphisms in ADHD nuclear families.
| SNP | Allele | T | NT | ?2 | p-value | Ep-value* | OR | SNP position |
| rs3787303 | T | 74 | 73 | 0.007 | 0.9343 | 1.0 | 1.01 | intron 1 |
| rs363012 | A | 132 | 128 | 0.062 | 0.8041 | 1.0 | 1.03 | intron 1 |
| rs363039 | G | 153 | 151 | 0.013 | 0.9087 | 1.0 | 1.01 | intron 1 |
| rs12626080 | G | 148 | 145 | 0.031 | 0.8609 | 1.0 | 1.02 | intron 1 |
| rs363052 | G | 100 | 97 | 0.046 | 0.8307 | 1.0 | 1.03 | intron 1 |
| rs363020 | T | 75 | 66 | 0.574 | 0.4485 | 0.99 | 1.13 | intron 1 |
| rs362562 | G | 172 | 138 | 3.72 | 0.0535 | 0.41 | 1.25 | intron 1 |
| rs6108461 | A | 186 | 136 | 7.764 | 0.0053 | 0.06 | 1.37 | intron 3 |
| rs362990 | A | 150 | 100 | 10 | 0.0016 | 0.02 | 1.5 | intron 4 |
| rs362998 | C | 40 | 32 | 0.889 | 0.3458 | 0.99 | 1.25 | exon 6 |
| rs6039820 | C | 152 | 136 | 0.889 | 0.3458 | 1.0 | 1.11 | intron 6 |
| rs6108464 | T | 165 | 159 | 0.111 | 0.7389 | 1.0 | 1.04 | intron 6 |
| rs3787283 | A | 146 | 136 | 0.355 | 0.5515 | 1.0 | 1.07 | intron 6 |
| rs3746544 | C | 162 | 143 | 1.184 | 0.2766 | 0.97 | 1.13 | 3′UTR |
| rs8636 | T | 174 | 149 | 1.935 | 0.1642 | 0.86 | 1.18 | 3′UTR |
T = Transmitted, NT = Not Transmitted, * = Empirical P-value from HAPLOVIEW assessed the gene-wide significance value estimated on the basis of 10000 permutations.
Figure 1Linkage disequilibrium relation (expressed as D′ values) of snap25 examined SNPs.
Haplotype analysis of SNAP25 SNPs in ADHD nuclear families.
| Haplotype | Freq. | T | UT | ?2 | p value | Empirical p value* |
| Block 1 | ||||||
| AG | 0.455 | 168 | 145 | 1.681 | 0.1947 | 0.865 |
| AA | 0.411 | 146 | 180 | 3.602 | 0.0577 | 0.317 |
| TG | 0.135 | 82 | 70 | 0.842 | 0.359 | 0.953 |
| Block 2 | ||||||
| AAC | 0.543 | 193 | 140 | 8.372 | 0.0038 | 0.0198 |
| GTC | 0.258 | 104 | 160 | 11.99 | 5.00E−04 | 0.0019 |
| GAC | 0.139 | 87 | 80 | 0.597 | 0.4395 | 0.986 |
| GAT | 0.056 | 33 | 40 | 0.78 | 0.3771 | 0.961 |
| Block 3 | ||||||
| AC | 0.624 | 151 | 169 | 1.002 | 0.3169 | 0.94 |
| CT | 0.358 | 172 | 149 | 1.682 | 0.1947 | 0.865 |
Freq = Haplotype frequency, T = Transmitted, UT = Untransmitted, * = 10000 permutation.
Figure 2Relative expression of SNAP25 in non- pathological samples.
A and B show decreased expression with ADHD associated alleles; C and D show the level of expression relative to ADHD risk and protective haplotypes respectively. Error bars represent the standard error of the mean.
Linkage disequilibrium relation of previously associated ADHD-SNAP25 variants with SNPs of this investigation.
| Previous Study | Associated SNPS | position | Current investigation | D′ | r2 |
| Barr et al. | rs3746544 | 3′UTR | rs6108461 | 0.40 | 0.11 |
| et al. | rs1051312 | 3′UTR | rs6108461 | ND | ND |
| Mill et al. | rs363006 | Intron 7 | rs6108461 | 1.0 | 0.27 |
| Feng et al. | rs6039806 | Intron 3 | rs6108461 | 1.00 | 1.00 |
| rs362549 | Intron 4 | rs6108461 | 1.00 | 1.00 | |
| rs362987 | Intron 5 | rs6108461 | 1.00 | 1.00 | |
| rs362988 | intron 7 | rs6108461 | 1.00 | 0.10 | |
| Brookes et al. | rs363020 | Intron 1 | rs6108461 | 1.00 | 0.18 |
| Kim et al. | rs3787283 | Intron 7 | rs6108461 | 0.19 | 0.01 |
| Guan et al. | rs8636 | 3′UTR | rs6108461 | 0.40 | 0.11 |
| Elia et al. | rs363032 | Intron 1 | rs6108461 | 0.26 | 0.04 |
| rs6133852 | Downstream | rs6108461 | 1.00 | 0.05 | |
| Mick et al. | rs362562 | Intron 1 | rs6108461 | 0.91 | 0.74 |
| rs362569 | Intron 1 | rs6108461 | 0.92 | 0.78 | |
| rs362564 | Intron 1 | rs6108461 | 0.93 | 0.37 | |
| Sarkar et al. | rs362569 | Intron 1 | rs6108461 | 0.92 | 0.78 |
| rs362988 | Intron 7 | rs6108461 | 0.54 | 0.20 | |
| Lasky-Su et al. | rs363012 | Intron 1 | rs6108461 | 0.58 | 0.09 |
| rs363043 | Intron 1 | rs6108461 | 0.8 | 0.31 | |
| rs362547 | Intron 1 | rs6108461 | 0.92 | 0.79 | |
| rs1984830 | Down stream | rs6108461 | 0.20 | 0.016 | |
| rs6032846 | Down stream | rs6108461 | 0.018 | 0.0 | |
| Barr et al. | rs3746544 | 3′UTR | rs362990 | 0.63 | 0.08 |
| et al. | rs1051312 | 3′UTR | rs362990 | ND | ND |
| Mill et al. | rs363006 | Intron 7 | rs362990 | 1.00 | 0.06 |
| Feng et al. | rs6039806 | Intron 3 | rs362990 | 1.00 | 0.27 |
| rs362549 | Intron 4 | rs362990 | 1.00 | 0.27 | |
| rs362987 | Intron 5 | rs362990 | 1.00 | 0.27 | |
| rs362988 | Intron 7 | rs362990 | 0.51 | 0.11 | |
| Brookes et al. | rs363020 | Intron 1 | rs362990 | 1.00 | 0.04 |
| Kim et al. | rs3787283 | Intron 7 | rs362990 | 0.39 | 0.09 |
| Guan et al. | rs8636 | 3′UTR | rs362990 | 0.63 | 0.08 |
| Elia et al. | rs363032 | Intron 1 | rs362990 | 0.01 | 0.00 |
| rs6133852 | Downstream | rs362990 | 0.31 | 0.01 | |
| Mick et al. | rs362562 | Intron 1 | rs362990 | 0.89 | 0.25 |
| rs362569 | Intron 1 | rs362990 | 1.00 | 0.30 | |
| rs362564 | Intron 1 | rs362990 | 1.00 | 0.12 | |
| Sarkar et al. | rs362569 | Intron 1 | rs362990 | 1.00 | 0.30 |
| rs362988 | Intron 7 | rs362990 | 0.51 | 0.11 | |
| Lasky-Su et al. | rs363012 | Intron 1 | rs362990 | 0.49 | 0.017 |
| rs363043 | Intron 1 | rs362990 | 0.04 | 0.001 | |
| rs362547 | Intron 1 | rs362990 | 1.00 | 0.30 | |
| rs1984830 | Downstream | rs362990 | 0.43 | 0.023 | |
| rs6032846 | Down stream | rs362990 | 0.27 | 0.14 |
ND = LD Not defined.