Literature DB >> 23588489

Non-coding RNAs in the development of sensory organs and related diseases.

Ivan Conte1, Sandro Banfi, Paola Bovolenta.   

Abstract

Genomes are transcribed well beyond the conventionally annotated protein-encoding genes and produce many thousands of regulatory non-coding RNAs (ncRNAs). In the last few years, ncRNAs, especially microRNAs and long non-coding RNA, have received increasing attention because of their implication in the function of chromatin-modifying complexes and in the regulation of transcriptional and post-transcriptional events. The morphological events and the genetic networks responsible for the development of sensory organs have been well delineated and therefore sensory organs have provided a useful scenario to address the role of ncRNAs. In this review, we summarize the current information on the importance of microRNAs and long non-coding RNAs during the development of the eye, inner ear, and olfactory system in vertebrates. We will also discuss those cases in which alteration of ncRNA expression has been linked to pathological conditions affecting these organs.

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Year:  2013        PMID: 23588489     DOI: 10.1007/s00018-013-1335-z

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  191 in total

1.  MicroRNA expression in the embryonic mouse inner ear.

Authors:  Xian-Ren Wang; Xue-Mei Zhang; Jing Zhen; Pen-Xing Zhang; Geng Xu; Hongyan Jiang
Journal:  Neuroreport       Date:  2010-06-23       Impact factor: 1.837

2.  Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs.

Authors:  Jacek Krol; Volker Busskamp; Ilona Markiewicz; Michael B Stadler; Sebastian Ribi; Jens Richter; Jens Duebel; Silvia Bicker; Hans Jörg Fehling; Dirk Schübeler; Thomas G Oertner; Gerhard Schratt; Miriam Bibel; Botond Roska; Witold Filipowicz
Journal:  Cell       Date:  2010-05-14       Impact factor: 41.582

3.  Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs.

Authors:  Yvonne Tay; Lev Kats; Leonardo Salmena; Dror Weiss; Shen Mynn Tan; Ugo Ala; Florian Karreth; Laura Poliseno; Paolo Provero; Ferdinando Di Cunto; Judy Lieberman; Isidore Rigoutsos; Pier Paolo Pandolfi
Journal:  Cell       Date:  2011-10-14       Impact factor: 41.582

4.  MicroRNA expression in zebrafish embryonic development.

Authors:  Erno Wienholds; Wigard P Kloosterman; Eric Miska; Ezequiel Alvarez-Saavedra; Eugene Berezikov; Ewart de Bruijn; H Robert Horvitz; Sakari Kauppinen; Ronald H A Plasterk
Journal:  Science       Date:  2005-05-26       Impact factor: 47.728

5.  MicroRNA (miRNA) transcriptome of mouse retina and identification of a sensory organ-specific miRNA cluster.

Authors:  Shunbin Xu; P Dane Witmer; Stephen Lumayag; Beatrix Kovacs; David Valle
Journal:  J Biol Chem       Date:  2007-06-27       Impact factor: 5.157

6.  Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.

Authors:  Marcel E Dinger; Paulo P Amaral; Tim R Mercer; Ken C Pang; Stephen J Bruce; Brooke B Gardiner; Marjan E Askarian-Amiri; Kelin Ru; Giulia Soldà; Cas Simons; Susan M Sunkin; Mark L Crowe; Sean M Grimmond; Andrew C Perkins; John S Mattick
Journal:  Genome Res       Date:  2008-06-18       Impact factor: 9.043

7.  MicroRNA profile of the developing mouse retina.

Authors:  Laszlo Hackler; Jun Wan; Anand Swaroop; Jiang Qian; Donald J Zack
Journal:  Invest Ophthalmol Vis Sci       Date:  2009-11-20       Impact factor: 4.799

8.  MicroRNA-218 regulates vascular patterning by modulation of Slit-Robo signaling.

Authors:  Eric M Small; Lillian B Sutherland; Kartik N Rajagopalan; Shusheng Wang; Eric N Olson
Journal:  Circ Res       Date:  2010-10-14       Impact factor: 17.367

9.  miRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay.

Authors:  Sergej Djuranovic; Ali Nahvi; Rachel Green
Journal:  Science       Date:  2012-04-13       Impact factor: 47.728

10.  Molecular basis of differential target regulation by miR-96 and miR-182: the Glypican-3 as a model.

Authors:  Sandra Jalvy-Delvaille; Marion Maurel; Vanessa Majo; Nathalie Pierre; Sandrine Chabas; Chantal Combe; Jean Rosenbaum; Francis Sagliocco; Christophe F Grosset
Journal:  Nucleic Acids Res       Date:  2011-10-18       Impact factor: 16.971

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  19 in total

Review 1.  The noncoding genome and hearing loss.

Authors:  Karen B Avraham; Lama Khalaily; Yael Noy; Lara Kamal; Tal Koffler-Brill; Shahar Taiber
Journal:  Hum Genet       Date:  2021-09-07       Impact factor: 4.132

2.  An Antagomir to MicroRNA-106b-5p Ameliorates Cerebral Ischemia and Reperfusion Injury in Rats Via Inhibiting Apoptosis and Oxidative Stress.

Authors:  Pengfei Li; Meihong Shen; Feng Gao; Jinping Wu; Jiahui Zhang; Fengmeng Teng; Chunbing Zhang
Journal:  Mol Neurobiol       Date:  2016-03-29       Impact factor: 5.590

3.  MiR-204 is responsible for inherited retinal dystrophy associated with ocular coloboma.

Authors:  Ivan Conte; Kristen D Hadfield; Sara Barbato; Sabrina Carrella; Mariateresa Pizzo; Rajeshwari S Bhat; Annamaria Carissimo; Marianthi Karali; Louise F Porter; Jill Urquhart; Sofie Hateley; James O'Sullivan; Forbes D C Manson; Stephan C F Neuhauss; Sandro Banfi; Graeme C M Black
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-08       Impact factor: 11.205

Review 4.  The cellular and molecular mechanisms of vertebrate lens development.

Authors:  Aleš Cvekl; Ruth Ashery-Padan
Journal:  Development       Date:  2014-11-18       Impact factor: 6.868

5.  Identification and validation of quantitative real-time reverse transcription PCR reference genes for gene expression analysis in teak (Tectona grandis L.f.).

Authors:  Esteban Galeano; Tarcísio Sales Vasconcelos; Daniel Alves Ramiro; Valentina de Fátima De Martin; Helaine Carrer
Journal:  BMC Res Notes       Date:  2014-07-22

6.  A comprehensive catalogue of the coding and non-coding transcripts of the human inner ear.

Authors:  Isabelle Schrauwen; Yehudit Hasin-Brumshtein; Jason J Corneveaux; Jeffrey Ohmen; Cory White; April N Allen; Aldons J Lusis; Guy Van Camp; Matthew J Huentelman; Rick A Friedman
Journal:  Hear Res       Date:  2015-09-01       Impact factor: 3.208

7.  Identification and characterization of FGF2-dependent mRNA: microRNA networks during lens fiber cell differentiation.

Authors:  Louise Wolf; Chun S Gao; Karen Gueta; Qing Xie; Tiphaine Chevallier; Nikhil R Podduturi; Jian Sun; Ivan Conte; Peggy S Zelenka; Ruth Ashery-Padan; Jiri Zavadil; Ales Cvekl
Journal:  G3 (Bethesda)       Date:  2013-12-09       Impact factor: 3.154

8.  The combination of transcriptomics and informatics identifies pathways targeted by miR-204 during neurogenesis and axon guidance.

Authors:  Ivan Conte; Stefania Merella; Jose Manuel Garcia-Manteiga; Chiara Migliore; Dejan Lazarevic; Sabrina Carrella; Raquel Marco-Ferreres; Raffaella Avellino; Nathan Paul Davidson; Warren Emmett; Remo Sanges; Nicholas Bockett; David Van Heel; Germana Meroni; Paola Bovolenta; Elia Stupka; Sandro Banfi
Journal:  Nucleic Acids Res       Date:  2014-06-03       Impact factor: 16.971

9.  Gap junction mediated miRNA intercellular transfer and gene regulation: A novel mechanism for intercellular genetic communication.

Authors:  Liang Zong; Yan Zhu; Ruqiang Liang; Hong-Bo Zhao
Journal:  Sci Rep       Date:  2016-01-27       Impact factor: 4.379

10.  Connexin26 gap junction mediates miRNA intercellular genetic communication in the cochlea and is required for inner ear development.

Authors:  Yan Zhu; Liang Zong; Ling Mei; Hong-Bo Zhao
Journal:  Sci Rep       Date:  2015-10-22       Impact factor: 4.379

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